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List of works by Gunnar W Klau

A branch-and-cut approach to the crossing number problem

A critical evaluation of network and pathway-based classifiers for outcome prediction in breast cancer

scientific article

A new graph-based method for pairwise global network alignment

scientific article

A realistic model under which the genetic code is optimal

scientific article published on 23 July 2013

An Algorithmic Framework for the Exact Solution of the Prize-Collecting Steiner Tree Problem

An Experimental Comparison of Orthogonal Compaction Algorithms

scholarly article by Gunnar W Klau et al published 2001 in Lecture Notes in Computer Science

An integer linear programming approach for finding deregulated subgraphs in regulatory networks.

scientific article published on 30 December 2011

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

scientific article

Antilope--a Lagrangian relaxation approach to the de novo peptide sequencing problem.

scientific article

BioNet: an R-Package for the functional analysis of biological networks

scientific article published on 25 February 2010

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data.

scientific article

CIDANE: comprehensive isoform discovery and abundance estimation

scientific article published on 30 January 2016

CLEVER: clique-enumerating variant finder

scientific article published on 11 October 2012

CSA: comprehensive comparison of pairwise protein structure alignments

scientific article published on 2 May 2012

Charge Group Partitioning in Biomolecular Simulation

Charge group partitioning in biomolecular simulation

scientific article published on March 2013

Combining Graph Labeling and Compaction

article published in 1999

Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis.

scientific article

DALIX: optimal DALI protein structure alignment.

scientific article

Exact Crossing Minimization

Functional module search in protein networks based on semantic similarity improves the analysis of proteomics data

scientific article

HapCol: accurate and memory-efficient haplotype assembly from long reads

scientific article

Haplotype threading: accurate polyploid phasing from long reads

scientific article published on 21 September 2020

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

scientific article

Integer Linear Programming in Computational Biology

Integer linear programming approaches for non-unique probe selection

Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum

scientific article

Integrating genetic dependencies and genomic alterations across pathways and cancer types

scientific article published on 14 July 2020

Lagrangian Relaxation Applied to Sparse Global Network Alignment

Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy

scientific article

Mapping proteins in the presence of paralogs using units of coevolution

scientific article

NatalieQ: a web server for protein-protein interaction network querying

scientific article

On optimal comparability editing with applications to molecular diagnostics

scientific article

On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes.

scientific article

Optimal labeling of point features in rectangular labeling models

Optimal robust non-unique probe selection using Integer Linear Programming

scientific article published in August 2004

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.

scientific article published on 19 October 2009

Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.

scientific article published on 16 April 2018

Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough.

scientific article published on 25 August 2017

Robustness and accuracy of functional modules in integrated network analysis

article

Using anticlustering to partition data sets into equivalent parts

scientific article published on 22 June 2020

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.

scientific article published on 6 February 2015

eXamine: Visualizing annotated networks in Cytoscape

scientific article published on 05 July 2018

eXamine: Visualizing annotated networks in Cytoscape.

scientific article published on 30 April 2018

eXamine: exploring annotated modules in networks.

scientific article

metaModules identifies key functional subnetworks in microbiome-related disease

scientific article published on 5 September 2015

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

scientific article

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