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List of works by Wei Li

A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth

scientific article published on August 2007

Accurate inference of isoforms from multiple sample RNA-Seq data.

scientific article

Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer

scientific article published on July 2009

CRISPR-FOCUS: A web server for designing focused CRISPR screening experiments.

scientific article

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

scientific article

Deciphering essential cistromes using genome-wide CRISPR screens

scientific article published on 14 November 2019

Definition of a FoxA1 Cistrome that is crucial for G1 to S-phase cell-cycle transit in castration-resistant prostate cancer

scientific article

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

scientific article

Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library

scientific article

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing.

scientific article published on 13 June 2017

Genome-wide analysis of estrogen receptor binding sites

scientific article (publication date: November 2006)

Genomic correlates of response to immune checkpoint therapies in clear cell renal cell carcinoma

scientific article published on 4 January 2018

High-content CRISPR screening

scientific article published in 2022

Improved design and analysis of CRISPR knockout screens

scientific article published on 01 December 2018

Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis

scholarly article

Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute

scientific article published on 01 February 2019

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

scientific article

Model-based analysis of ChIP-Seq (MACS)

scientific article

Model-based analysis of tiling-arrays for ChIP-chip.

scientific article

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR.

scientific article

Sequence determinants of improved CRISPR sgRNA design

scientific article published on 10 June 2015

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

scientific article published on 7 February 2008

Target gene-specific regulation of androgen receptor activity by p42/p44 mitogen-activated protein kinase

scientific article published on 11 September 2008

Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads

scientific article published on 11 October 2012

scMAGeCK links genotypes with multiple phenotypes in single-cell CRISPR screens

scientific article published on 24 January 2020

xMAN: extreme MApping of OligoNucleotides

scientific article

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