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List of works by Christoforos Nikolaou

"Word" preference in the genomic text and genome evolution: different modes of n-tuplet usage in coding and noncoding sequences.

scientific article published on 19 July 2005

A novel skew analysis reveals substitution asymmetries linked to genetic code GC-biases and PolIII a-subunit isoforms

scientific article published on 26 June 2016

A study of the middle-scale nucleotide clustering in DNA sequences of various origin and functionality, by means of a method based on a modified standard deviation.

scientific article published in August 2002

An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis

scientific article published on 09 May 2019

Circulating microRNAs in the early prediction of disease recurrence in primary breast cancer

scientific article published on 11 July 2018

Dissecting Hes-centred transcriptional networks in neural stem cell maintenance and tumorigenesis in Drosophila

scientific article published on 23 November 2020

Distinct chromosomal “niches” in the genome of <i>Saccharomyces cerevisiae</i> provide the background for genomic innovation and shape the fate of gene duplicates

scientific article published in 2022

ECCB 2018: The 17th European Conference on Computational Biology

scientific article published on 01 September 2018

Genome urbanization: clusters of topologically co-regulated genes delineate functional compartments in the genome of Saccharomyces cerevisiae

scientific article

Genomic Responses of Mouse Synovial Fibroblasts During Tumor Necrosis Factor-Driven Arthritogenesis Greatly Mimic Those in Human Rheumatoid Arthritis

scientific article published on 13 April 2017

Groucho related gene 5 (GRG5) is involved in embryonic and neural stem cell state decisions

scientific article published in Scientific Reports

Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis.

scientific article

Intestinal myofibroblast-specific Tpl2-Cox-2-PGE2 pathway links innate sensing to epithelial homeostasis.

scientific article

Invisible cities: segregated domains in the yeast genome with distinct structural and functional attributes

scientific article published on 05 August 2017

Menzerath-Altmann law in mammalian exons reflects the dynamics of gene structure evolution

scientific article published on 20 August 2014

MicroRNAs for Fine-Tuning of Mouse Embryonic Stem Cell Fate Decision through Regulation of TGF-β Signaling.

scientific article published on 8 February 2016

Mosquitoes cloak their legs to resist insecticides

scientific article published on 17 July 2019

Multi-criterial coding sequence prediction. Combination of GeneMark with two novel, coding-character specific quantities.

scientific article published in October 2005

Nucleosome positioning as a determinant of exon recognition

scientific article

Orphan and gene related CpG Islands follow power-law-like distributions in several genomes: evidence of function-related and taxonomy-related modes of distribution

scientific article

Promyelocytic Leukemia Protein Is an Essential Regulator of Stem Cell Pluripotency and Somatic Cell Reprogramming.

scientific article

Promyelocytic leukemia protein ( PML ) controls breast cancer cell proliferation by modulating Forkhead transcription factors

scientific article published on 16 May 2019

Rad9 interacts with Aft1 to facilitate genome surveillance in fragile genomic sites under non-DNA damage-inducing conditions in S. cerevisiae

scientific article

Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae

scientific article published on 12 November 2010

Structure and Chromosomal Organization of Yeast Genes Regulated by Topoisomerase II.

scientific article published on 3 January 2018

Targeted Metabolic Profiling of the Tg197 Mouse Model Reveals Itaconic Acid as a Marker of Rheumatoid Arthritis

scientific article published on 5 October 2016

The 3D enhancer network of the developing T cell genome is controlled by SATB1

scientific article

Topoisomerase II regulates yeast genes with singular chromatin architectures

scientific article published on 09 August 2013

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