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List of works by Hiroki R Ueda

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System-level identification of transcriptional circuits underlying mammalian circadian clocks

scientific article
Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis

scientific article published on 17 April 2014
Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

scientific article published on July 2006
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis

scientific article
Thyrotrophin in the pars tuberalis triggers photoperiodic response.

scientific article published in March 2008
Feedback repression is required for mammalian circadian clock function

scientific article
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

scientific article
Whole-body imaging with single-cell resolution by tissue decolorization

scientific article
Delay in feedback repression by cryptochrome 1 is required for circadian clock function

scientific journal article
Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging

scientific article published on 8 October 2015
A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock

scientific article
Measurement of internal body time by blood metabolomics.

scholarly article
CKIepsilon/delta-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock

scientific article
Atypical Cadherins Dachsous and Fat Control Dynamics of Noncentrosomal Microtubules in Planar Cell Polarity

scientific article published on September 14, 2010
Human blood metabolite timetable indicates internal body time

scientific article
The BMAL1 C terminus regulates the circadian transcription feedback loop.

scholarly article
Universality and flexibility in gene expression from bacteria to human

scholarly article
Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks

scientific article published on 21 September 2008
Context-dependent wiring of Sox2 regulatory networks for self-renewal of embryonic and trophoblast stem cells

scientific article published on 10 October 2013
Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks

scientific article published on 21 October 2007
Molecular-timetable methods for detection of body time and rhythm disorders from single-time-point genome-wide expression profiles

scholarly article
Acute induction of Eya3 by late-night light stimulation triggers TSHβ expression in photoperiodism

scientific article
Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock

scholarly article
A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.

scientific article published on 5 March 2018
Quantitative expression profile of distinct functional regions in the adult mouse brain

scientific article
Identification of a Novel Cryptochrome Differentiating Domain Required for Feedback Repression in Circadian Clock Function

scientific article published on June 12, 2012
An automated system for high-throughput single cell-based breeding

scientific article
Transcriptomic landscape of the primitive streak.

scientific article published on 28 July 2010
A design principle for a posttranslational biochemical oscillator

scientific article
Guidelines for Genome-Scale Analysis of Biological Rhythms

scientific article published on November 2017
Detection of a circadian enhancer in the mDbp promoter using prokaryotic transposon vector-based strategy

scientific article published on 5 February 2008
FASTER: an unsupervised fully automated sleep staging method for mice

scientific article published on 28 April 2013
Tissue clearing and its applications in neuroscience

scientific article published on 01 February 2020
Design Principles of Phosphorylation-Dependent Timekeeping in Eukaryotic Circadian Clocks

scientific article published on 16 October 2017
A mammalian circadian clock model incorporating daytime expression elements

scientific article
Establishment of TSH β real-time monitoring system in mammalian photoperiodism

scientific article published on 12 June 2013
Mammalian Circadian Clock: The Roles of Transcriptional Repression and Delay

scientific article published on January 1, 2013
Perturbational formulation of principal component analysis in molecular dynamics simulation

scientific article published on 7 October 2008
Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues

scientific article published on 27 April 2020
Seeing the forest and trees: whole‐body and whole‐brain imaging for circadian biology

scientific article published on September 1, 2015
Publisher Correction: Tissue clearing and its applications in neuroscience

scientific article published on 09 March 2020
Reflections on the past two decades of neuroscience

scientific article published on 02 September 2020
Perturbation analyses of intermolecular interactions

scientific article published on 12 August 2011
NEK9 regulates primary cilia formation by acting as a selective autophagy adaptor for MYH9/myosin IIA

scientific article published on 02 June 2021
Non-enzymatic DNA cleavage reaction induced by 5-ethynyluracil in methylamine aqueous solution and application to DNA concatenation

scientific article
High-throughput Genetically Modified Animal Experiments Achieved by Next-generation Mammalian Genetics

scientific article published in 2022
Genetic and molecular analysis of wild-derived arrhythmic mice.

scientific article
Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing

scientific article published on 05 March 2021

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