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List of works by Hiroki R Ueda

A design principle for a posttranslational biochemical oscillator

scientific article

A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock

scientific article

A mammalian circadian clock model incorporating daytime expression elements

scientific article

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.

scientific article published on 5 March 2018

Acute induction of Eya3 by late-night light stimulation triggers TSHβ expression in photoperiodism

scientific article

Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.

scientific article published on 8 October 2015

An automated system for high-throughput single cell-based breeding

scientific article

An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis

scientific article

Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock

scholarly article

Atypical Cadherins Dachsous and Fat Control Dynamics of Noncentrosomal Microtubules in Planar Cell Polarity ⬇️

scientific article published on September 14, 2010

CKIepsilon/delta-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock

scientific article

Context-dependent wiring of Sox2 regulatory networks for self-renewal of embryonic and trophoblast stem cells

scientific article published on 10 October 2013

Delay in feedback repression by cryptochrome 1 is required for circadian clock function

scientific journal article

Detection of a circadian enhancer in the mDbp promoter using prokaryotic transposon vector-based strategy

scientific article published on 5 February 2008

Establishment of TSH β real-time monitoring system in mammalian photoperiodism

scientific article published on 12 June 2013

FASTER: an unsupervised fully automated sleep staging method for mice

scientific article published on 28 April 2013

Feedback repression is required for mammalian circadian clock function

scientific article

Genetic and molecular analysis of wild-derived arrhythmic mice.

scientific article

Guidelines for Genome-Scale Analysis of Biological Rhythms

scientific article published on November 2017

High-throughput Genetically Modified Animal Experiments Achieved by Next-generation Mammalian Genetics

scientific article published in 2022

Human blood metabolite timetable indicates internal body time

scientific article

Identification of a Novel Cryptochrome Differentiating Domain Required for Feedback Repression in Circadian Clock Function ⬇️

scientific article published on June 12, 2012

Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

scientific article published on July 2006

Measurement of internal body time by blood metabolomics.

scholarly article

Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks

scientific article published on 21 October 2007

Molecular-timetable methods for detection of body time and rhythm disorders from single-time-point genome-wide expression profiles

scholarly article

NEK9 regulates primary cilia formation by acting as a selective autophagy adaptor for MYH9/myosin IIA

scientific article published on 02 June 2021

Non-enzymatic DNA cleavage reaction induced by 5-ethynyluracil in methylamine aqueous solution and application to DNA concatenation

scientific article

Perturbation analyses of intermolecular interactions

scientific article published on 12 August 2011

Perturbational formulation of principal component analysis in molecular dynamics simulation

scientific article published on 7 October 2008

Proof-by-synthesis of the transcriptional logic of mammalian circadian clocks

scientific article published on 21 September 2008

Publisher Correction: Tissue clearing and its applications in neuroscience

scientific article published on 09 March 2020

Quantitative expression profile of distinct functional regions in the adult mouse brain

scientific article

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

scientific article

Reflections on the past two decades of neuroscience

scientific article published on 02 September 2020

System-level identification of transcriptional circuits underlying mammalian circadian clocks

scientific article

The BMAL1 C terminus regulates the circadian transcription feedback loop.

scholarly article

Thyrotrophin in the pars tuberalis triggers photoperiodic response.

scientific article published in March 2008

Tissue clearing and its applications in neuroscience

scientific article published on 01 February 2020

Transcriptomic landscape of the primitive streak.

scientific article published on 28 July 2010

Universality and flexibility in gene expression from bacteria to human

scholarly article

Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues

scientific article published on 27 April 2020

Whole-body imaging with single-cell resolution by tissue decolorization

scientific article

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis

scientific article published on 17 April 2014

Whole-organ analysis of TGF-β-mediated remodelling of the tumour microenvironment by tissue clearing

scientific article published on 05 March 2021

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