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List of works by Bérénice Batut

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

scientific article published on 01 October 2020

ASaiM: a Galaxy-based framework to analyze microbiota data.

scientific article

Community-Driven Data Analysis Training for Biology

scientific article published on 01 June 2018

ENASearch: A Python library for interacting with ENA's API

scientific article published on 25 October 2017

Empowering the community with notebooks for bespoke microbiome analyses

Environmental Pollutant Benzo[a]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota

scientific article published on 15 August 2017

Establishing the ELIXIR Microbiome Community

scientific article published on 8 January 2024

Four simple recommendations to encourage best practices in research software

scientific article

Galaxy Training: A powerful framework for teaching!

Genome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes

scientific article published on 01 October 2020

How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources

How to increase the findability, visibility, and impact of Galaxy tools for your scientific community

In silico experimental evolution: a tool to test evolutionary scenarios

scientific article (publication date: 2013)

Reductive genome evolution at both ends of the bacterial population size spectrum.

scientific article

Ten simple rules for making training materials FAIR

Scientific Article

Ten simple rules for making training materials FAIR

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

scientific article published in July 2018

The RNA workbench 2.0: next generation RNA data analysis

scientific article published on 01 July 2019

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

scientific article published on 05 June 2017

The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR

scientific article published on 07 November 2019

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