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List of works by Peter J Cock

Activation of hatching in diapaused and quiescent Globodera pallida

scientific article published on 20 December 2012

BOSC 2019, the 20th annual Bioinformatics Open Source Conference

scientific article published on 20 December 2019

BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference

scientific article published in 2021

Biopython: freely available Python tools for computational molecular biology and bioinformatics

scientific article

Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets.

scientific article

Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes.

scientific article published in August 2012

DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing Phytophthora Diversity in Anthropized and Natural Ecosystems

scientific article published on 23 March 2022

De novo assembly of the Pasteuria penetrans genome reveals high plasticity, host dependency, and BclA-like collagens

scholarly article published 4 December 2018

Distinct circular single-stranded DNA viruses exist in different soil types

scientific article published on 3 April 2015

Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster

scientific article

Evolution of Gene Overlaps: Relative Reading Frame Bias in Prokaryotic Two-Component System Genes

article

Evolution of Prokaryotic Two-Component System Signaling Pathways: Gene Fusions and Fissions

article

Evolution of prokaryotic two-component systems: insights from comparative genomics.

scientific article published on 25 February 2009

Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps.

scientific article published on 14 December 2009

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

scientific article published on 13 June 2016

From plants to nematodes: Serratia grimesii BXF1 genome reveals an adaptation to the modulation of multi-species interactions

article

Galaxy as a platform for identifying candidate pathogen effectors.

scientific article

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology

scientific article published on 17 September 2013

Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate.

scientific article

Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors

scientific article published on 10 August 2011

Genome-wide identification of genes regulated by the Rcs phosphorelay system in Erwinia amylovora.

scientific article

Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy.

scientific article published on 18 May 2015

Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida

scientific article

Identification and localisation of the NB-LRR gene family within the potato genome

scientific article

NCBI BLAST+ integrated into Galaxy.

scientific article published on 25 August 2015

Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins.

scientific article published on 9 September 2015

Novel bacteriophages containing a genome of another bacteriophage within their genomes

scientific article

Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus

article

Phytophthora austrocedri in Argentina and Co-Inhabiting Phytophthoras: Roles of Anthropogenic and Abiotic Factors in Species Distribution and Diversity

scientific article published on 20 November 2020

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations

scientific article published on 08 October 2013

Shared transcriptional control and disparate gain and loss of aphid parasitism genes

article

Shared transcriptional control and disparate gain and loss of aphid parasitism genes and loci acquired via horizontal gene transfer

article

The 2015 Bioinformatics Open Source Conference (BOSC 2015)

scientific article

The 2016 Bioinformatics Open Source Conference (BOSC)

scientific article

The 2017 Bioinformatics Open Source Conference (BOSC).

scientific article published on 19 October 2017

The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)

scientific article published on 17 August 2018

The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020)

scientific article published on 21 September 2020

The Bioinformatics Open Source Conference (BOSC) 2013

scientific article

The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus

scientific article

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. ⬇️

scientific article published on 10 June 2016

Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships.

scientific article published on February 2008

Using Tablet for visual exploration of second-generation sequencing data

scientific article

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