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List of works by Sacha Baginsky

A workflow to increase the detection rate of proteins from unsequenced organisms in high-throughput proteomics experiments

scientific article published on 01 December 2007

AUDENS: a tool for automated peptide de novo sequencing.

scientific article

Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts.

scientific article

Arabidopsis proteomics: a simple and standardizable workflow for quantitative proteome characterization.

scientific article

Arabidopsis thaliana as a model organism for plant proteome research ⬇️

scientific article published on 06 August 2010

Characterization of chloroplast protein import without Tic56, a component of the 1-megadalton translocon at the inner envelope membrane of chloroplasts.

scientific article published in March 2015

Chloroplast mRNA 3′-End Nuclease Complex

scientific article published on 01 January 2001

Chloroplast transcription at different light intensities. Glutathione-mediated phosphorylation of the major RNA polymerase involved in redox-regulated organellar gene expression

scientific article

Chloroplast-localized BICAT proteins shape stromal calcium signals and are required for efficient photosynthesis

scientific article published on 31 August 2018

Chromoplast differentiation in bell pepper (Capsicum annuum) fruits

scientific article published on 30 November 2020

Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level.

scientific article published in October 2012

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

scientific article

Comparative proteomic analysis of amaranth mesophyll and bundle sheath chloroplasts and their adaptation to salt stress.

scientific article

Consequences of impaired 1-MDa TIC complex assembly for the abundance and composition of chloroplast high-molecular mass protein complexes

article

Endonucleolytic activation directs dark-induced chloroplast mRNA degradation.

scientific article published on October 2002

Gene expression analysis, proteomics, and network discovery.

scientific article published on 11 December 2009

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

scientific article published on 24 April 2008

High light-dependent phosphorylation of photosystem II inner antenna CP29 in monocots is STN7 independent and enhances nonphotochemical quenching

scientific article

Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).

scientific article

Identification of STN7/STN8 kinase targets reveals connections between electron transport, metabolism and gene expression.

scientific article

Identification of four plastid-localized protein kinases.

scientific article published on 23 May 2016

Identification of protein N-termini in Cyanophora paradoxa cyanelles: transit peptide composition and sequence determinants for precursor maturation.

scientific article

Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly

scientific article

MAPKs Influence Pollen Tube Growth by Controlling the Formation of Phosphatidylinositol 4,5-Bisphosphate in an Apical Plasma Membrane Domain

scientific article published on 22 November 2017

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data

scientific article (publication date: 2011)

MSE for Label-Free Absolute Protein Quantification in Complex Proteomes.

scientific article published in January 2018

Mass Spectrometric Identification of RNA Binding Proteins from Dried EMSA Gels

scientific article published on 01 May 2004

Mild proteasomal stress improves photosynthetic performance in Arabidopsis chloroplasts

scientific article published on 03 April 2020

On the Extent of Tyrosine Phosphorylation in Chloroplasts.

scientific article

PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription

scientific article published on 01 March 1999

Plastid proteomics in higher plants: current state and future goals.

scientific article published on 24 February 2011

Protein identification and quantification by data-independent acquisition and multi-parallel collision-induced dissociation mass spectrometry (MS(E)) in the chloroplast stroma proteome.

scientific article

Protein import-independent functions of Tic56, a component of the 1-MDa translocase at the inner chloroplast envelope membrane

scientific article

Protein phosphorylation in chloroplasts - a survey of phosphorylation targets.

scientific article

Proteome Analysis of Bell Pepper ( Capsicum annuum L.) Chromoplasts

article

Proteome Analysis of Chloroplast mRNA Processing and Degradation

scientific article published on 01 February 2007

Proteome analysis of tobacco bright yellow-2 (BY-2) cell culture plastids as a model for undifferentiated heterotrophic plastids.

scientific article

Proteome dynamics during plastid differentiation in rice

article

RETRACTED ARTICLE:The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation

retracted scholarly article

Signal integration by chloroplast phosphorylation networks: an update

scientific article

Synergistic toxicity of copper and gold compounds in Cupriavidus metallidurans.

scientific article published on 22 September 2017

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

scientific article

Tailored Use of Targeted Proteomics in Plant-Specific Applications

article

The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.

scientific article

The MultinationalArabidopsisSteering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology

article

The Peptide Microarray ChloroPhos1.0: A Screening Tool for the Identification of Arabidopsis thaliana Chloroplast Protein Kinase Substrates

scientific article

The RNA-binding protein RNP29 is an unusual Toc159 transport substrate.

scientific article

The chloroplast import receptor Toc90 partially restores the accumulation of Toc159 client proteins in the Arabidopsis thaliana ppi2 mutant.

scientific article

The chloroplast kinase network: new insights from large-scale phosphoproteome profiling.

scientific article published on 10 August 2009

The novel chloroplast outer membrane kinase KOC1 is a required component of the plastid protein import machinery.

scientific article

The peptide microarray "ChloroPhos1.0" identifies new phosphorylation targets of plastid casein kinase II (pCKII) in Arabidopsis thaliana

scientific article

The zinc repository of Cupriavidus metallidurans.

scientific article

Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.

scientific article

Transcription factor phosphorylation by a protein kinase associated with chloroplast RNA polymerase from mustard (Sinapis alba)

scientific article published on 01 May 1997

Working day and night: Plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids

scientific article published on 03 August 2020

plprot: a comprehensive proteome database for different plastid types.

scientific article

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