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List of works by Tsutomu Katayama

A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin

scientific article

A replicase clamp-binding dynamin-like protein promotes colocalization of nascent DNA strands and equipartitioning of chromosomes in E. coli.

scientific article published on 30 August 2013

A stimulation factor for hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli

scientific article published on 01 February 1998

AAA+ proteins. Editorial

scientific article published on 13 July 2012

Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli

scientific article published on 01 March 1997

An isolated Hda-clamp complex is functional in the regulatory inactivation of DnaA and DNA replication.

scientific article

Arrest of cell division and nucleoid partition by genetic alterations in the sliding clamp of the replicase and in DnaA

scientific article published on 01 October 2001

Assignment of 1H, 13C and 15N resonances of N-terminal domain of DnaA protein.

scientific article published on 5 May 2007

Basic and aromatic residues in the C-terminal domain of PriC are involved in ssDNA and SSB binding

scientific article

Bioconjugation of Oligodeoxynucleotides Carrying 1,4-Dicarbonyl Groups via Reductive Amination with Lysine Residues.

scientific article published on 22 July 2015

Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

scientific article published in January 2005

Chromosomal location of the DnaA-reactivating sequence DARS2 is important to regulate timely initiation of DNA replication in Escherichia coli

scientific article published on 25 July 2016

Cooperative DnaA Binding to the Negatively Supercoiled datA Locus Stimulates DnaA-ATP Hydrolysis.

scientific article

Cooperative working of bacterial chromosome replication proteins generated by a reconstituted protein expression system ⬇️

scientific article published on June 3, 2013

CrfC Protein, a Nucleoid Partition Factor, Localizes to Nucleoid Poles via the Activities of Specific Nucleoid-Associated Proteins

scientific article published on 07 February 2019

Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site.

scientific article

DNA polymerase IV mediates efficient and quick recovery of replication forks stalled at N2-dG adducts

scientific article published on 23 June 2014

DNA replication defects in a mutant deficient in the thioredoxin homolog YbbN ⬇️

scientific article published on December 31, 2010

Decrease in expression of the master operon of flagellin synthesis in a dnaA46 mutant of Escherichia coli.

scientific article

Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain.

scientific article published in November 2002

DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading.

scientific article published on 24 July 2009

DiaA, a novel DnaA-binding protein, ensures the timely initiation of Escherichia coli chromosome replication.

scientific article

Differentiation of the DnaA-oriC subcomplex for DNA unwinding in a replication initiation complex.

scientific article

DnaA Protein Lys-415 Is Close to the ATP-Binding Site: ATP-Pyridoxal Affinity Labeling ⬇️

scientific article published on November 16, 2001

DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation

scientific article

DnaA protein DNA-binding domain binds to Hda protein to promote inter-AAA+ domain interaction involved in regulatory inactivation of DnaA.

scientific article published on 27 June 2011

DnaA protein is sensitive to a soluble factor and is specifically inactivated for initiation of in vitro replication of the Escherichia coli minichromosome.

scientific article published in April 1995

DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity.

scientific article published on February 2010

DnaB helicase is recruited to the replication initiation complex via binding of DnaA domain I to the lateral surface of the DnaB N-terminal domain

scientific article published on 15 June 2020

Domain separation and characterization of PriC, a replication restart primosome factor in Escherichia coli.

scientific article published on 2 July 2013

Exponential propagation of large circular DNA by reconstitution of a chromosome-replication cycle.

scientific article published on 28 September 2017

Expression of a Vibrio parahaemolyticus toxin in Escherichia coli results in chromosomal DNA degradation

scientific article published on 18 August 2017

Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro ⬇️

scientific article published on May 1, 2003

Feedback controls restrain the initiation of Escherichia coli chromosomal replication.

scientific article

Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family.

scientific article published on 17 May 2005

Functional analysis of CedA based on its structure: residues important in binding of DNA and RNA polymerase and in the cell division regulation.

scientific article published on 23 September 2015

Hda monomerization by ADP binding promotes replicase clamp-mediated DnaA-ATP hydrolysis.

scientific article published on 30 October 2008

Identification of the region in Escherichia coli DnaA protein required for specific recognition of the DnaA box.

scientific article published on September 2003

Inhibition of cell growth and stable DNA replication by overexpression of the bla gene of plasmid pBR322 in Escherichia coli.

scientific article published in September 1990

Initiation of DNA Replication at the Chromosomal Origin of E. coli, oriC.

scientific article published in January 2017

Initiation of chromosomal DNA replication which is stimulated without oversupply of DnaA protein in Escherichia coli

scientific article published on 01 May 1991

Involvement of histidine in complex formation of PriB and single-stranded DNA.

scientific article

Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.

scientific article published in January 2006

Isolation and characterization of inhibitory factors of DNA polymerase III holoenzyme from Escherichia coli

scientific article published on 01 August 1995

Long inverted repeat transiently stalls DNA replication by forming hairpin structures on both leading and lagging strands

scientific article published on 6 January 2016

Molecular design of inhibitors of in vitro oriC DNA replication based on the potential to block the ATP binding of DnaA protein

scientific article published on 01 October 1996

Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex.

scientific article

Near-atomic structural model for bacterial DNA replication initiation complex and its functional insights.

scientific article

Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA Box VI and VII motifs

scientific article published on 01 February 2010

Rapid Purification and Characterization of Mutant Origin Recognition Complexes in Saccharomyces cerevisiae.

scientific article published on 18 April 2016

Reactivation of DnaA by DNA sequence-specific nucleotide exchange in vitro.

scientific article

Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

scientific article published in March 2010

Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli.

scientific article published on 10 October 2017

Replication-Dependent Recruitment of the β-Subunit of DNA Polymerase III from Cytosolic Spaces to Replication Forks in Escherichia coli ⬇️

scientific article published on February 1, 2002

Report from the Working Group of the Molecular Biology Society of Japan for the investigation of fraud in research papers.

scientific article published in August 2009

Roles for the AAA+ motifs of DnaA in the initiation of DNA replication.

scientific article

Short CCG repeat in huntingtin gene is an obstacle for replicative DNA polymerases, potentially hampering progression of replication fork.

scientific article published on 13 August 2015

Site-Specific Turn-On Fluorescent Labeling of DNA-Interacting Protein Using Oligodeoxynucleotides That Modify Lysines To Produce 5,6-Dimethoxy 3-Methyleneisoindolin-1-one.

scientific article

Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo.

scientific article

Specific basic patch-dependent multimerization of Saccharomyces cerevisiae ORC on single-stranded DNA promotes ATP hydrolysis

scientific article published on 10 July 2019

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues

scientific article

Stable nucleotide binding to DnaA requires a specific glutamic acid residue within the AAA+ box II motif

scientific article published on 08 May 2012

Structural basis of replication origin recognition by the DnaA protein

scientific article (publication date: 15 April 2003)

Structure and function of DnaA N-terminal domains: specific sites and mechanisms in inter-DnaA interaction and in DnaB helicase loading on oriC.

scientific article published on 9 April 2007

Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex

scientific article

Suppressors of DnaA(ATP) imposed overinitiation in Escherichia coli.

scientific article published on 19 December 2010

The Arg Fingers of Key DnaA Protomers Are Oriented Inward within the Replication Origin oriC and Stimulate DnaA Subcomplexes in the Initiation Complex

scientific article

The DnaA AAA+ Domain His136 Residue Directs DnaB Replicative Helicase to the Unwound Region of the Replication Origin,

scientific article published on 31 August 2018

The DnaA Cycle in Escherichia coli: Activation, Function and Inactivation of the Initiator Protein.

scientific article published on 21 December 2017

The DnaA N-terminal domain interacts with Hda to facilitate replicase clamp-mediated inactivation of DnaA.

scientific article published on 16 May 2013

The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner

scientific article published on April 2006

The Escherichia coli Cryptic Prophage Protein YfdR Binds to DnaA and Initiation of Chromosomal Replication Is Inhibited by Overexpression of the Gene Cluster yfdQ-yfdR-yfdS-yfdT

scientific article published on 3 March 2016

The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.

scientific article

The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes

scientific article

The nucleoid protein H-NS facilitates chromosome DNA replication in Escherichia coli dnaA mutants.

scientific article

Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation.

scientific article

Transcriptional control for initiation of chromosomal replication in Escherichia coli: fluctuation of the level of origin transcription ensures timely initiation

scientific article published on 01 September 2003

X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation

scientific article published on 30 October 2017

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