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List of works by Marco A Mendoza-Parra

A comprehensive resource for retrieving, visualizing, and integrating functional genomics data

scientific article published on 09 December 2019

A quality control system for profiles obtained by ChIP sequencing.

scientific article published on 14 September 2013

Antibody performance in ChIP-sequencing assays: From quality scores of public data sets to quantitative certification.

scientific article

Assessing quality standards for ChIP-seq and related massive parallel sequencing-generated datasets: When rating goes beyond avoiding the crisis

scientific article

Characterising ChIP-seq binding patterns by model-based peak shape deconvolution.

scientific article

Development of biotin-retinoid conjugates as chemical probes for analysis of retinoid function

scientific article published on 06 June 2018

Dissecting the retinoid-induced differentiation of F9 embryonal stem cells by integrative genomics

scientific article published on 11 October 2011

Epimetheus - a multi-profile normalizer for epigenomic sequencing data

scientific article

Integrative genomics to dissect retinoid functions.

scientific article published on January 2014

LOGIQA: a database dedicated to long-range genome interactions quality assessment.

scientific article

Modeling gene-regulatory networks to describe cell fate transitions and predict master regulators

article

NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets

scientific article published in January 2016

POLYPHEMUS: R package for comparative analysis of RNA polymerase II ChIP-seq profiles by non-linear normalization

scientific article published on 7 December 2011

Patient-matched analysis identifies deregulated networks in prostate cancer to guide personalized therapeutic intervention

scientific article published on 15 November 2021

RARβ Agonist Drug (C286) Demonstrates Efficacy in a Pre-clinical Neuropathic Pain Model Restoring Multiple Pathways via DNA Repair Mechanisms

scientific article published on 11 November 2019

Real-time SARS-CoV-2 diagnostic and variants tracking over multiple candidates using nanopore DNA sequencing

scientific article published on 05 August 2021

Reconstructed cell fate-regulatory programs in stem cells reveal hierarchies and key factors of neurogenesis.

scientific article published on 20 September 2016

Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis.

scientific article published on 19 May 2016

Senescence-associated reprogramming promotes cancer stemness.

scientific article published on 20 December 2017

Senescence-secreted factors activate Myc and sensitize pretransformed cells to TRAIL-induced apoptosis

scientific article

Single-tube linear DNA amplification (LinDA) for robust ChIP-seq.

scientific article published on 5 June 2011

Single-tube linear DNA amplification for genome-wide studies using a few thousand cells.

scientific article published on 26 January 2012

Spo11-accessory proteins link double-strand break sites to the chromosome axis in early meiotic recombination

scientific article published on 01 August 2011

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