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List of works by Matthew Z DeMaere

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters.

scientific article

An integrative study of a meromictic lake ecosystem in Antarctica

scientific article

Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny

article

Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics

scientific article

CAMISIM: simulating metagenomes and microbial communities

scientific article published on 08 February 2019

Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

scientific article

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

article

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

scientific article published on 2 October 2017

Crystal structure of a soluble form of the intracellular chloride ion channel CLIC1 (NCC27) at 1.4-A resolution

scientific article

Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C).

scientific article published on 8 November 2016

Evaluation of ddRADseq for reduced representation metagenome sequencing.

scientific article published on 19 September 2017

Genomic variation and biogeography of Antarctic haloarchaea.

scientific article published on 20 June 2018

Global biogeography of SAR11 marine bacteria

scientific article

High contiguity genome sequence of a multidrug-resistant hospital isolate of

scientific article published on 13 February 2019

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

scientific article published on 30 September 2013

Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids

scientific article published on 15 March 2019

Key microbial drivers in Antarctic aquatic environments

scientific article

Metagenomic Hi-C of a Healthy Human Fecal Microbiome Transplant Donor

scientific article published on 06 February 2020

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

scientific article published on 25 April 2013

Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated Archaea: the role of ammonia oxidizers.

scientific article published in January 2007

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

scientific article published on 18 March 2010

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

scientific article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

scientific article

Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies

Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies.

scientific article published on 15 November 2017

The genomic basis of trophic strategy in marine bacteria

scholarly article

The intracellular chloride ion channel protein CLIC1 undergoes a redox-controlled structural transition

scientific article

The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics.

scientific article

Virophage control of antarctic algal host-virus dynamics

scientific article

bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)

bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes

scientific article published on 26 February 2019

qc3C: Reference-free quality control for Hi-C sequencing data

scientific article published on 11 October 2021

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