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List of works by Jie Lyu

A Click Chemistry Approach Reveals the Chromatin-Dependent Histone H3K36 Deacylase Nature of SIRT7

scientific article published on 04 February 2019

Chromatin modifications and genomic contexts linked to dynamic DNA methylation patterns across human cell types

scientific article

Computational identification of putative lincRNAs in mouse embryonic stem cell

scientific article published on 07 October 2016

CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes

scientific article

CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data

scientific article

DORGE: Discovery of Oncogenes and tumoR suppressor genes using Genetic and Epigenetic features

scientific article published on 11 November 2020

DevMouse, the mouse developmental methylome database and analysis tools.

scientific article published on 09 January 2014

Discovering cooperative relationships of chromatin modifications in human T cells based on a proposed closeness measure

scientific article

DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database

scientific article

DiseaseMeth: a human disease methylation database ⬇️

scientific article published on December 1, 2011

ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia.

scientific article published on March 2017

HHMD: the human histone modification database

scientific article

Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation

scientific article published on 17 October 2019

Identification and Epigenetic Analysis of a Maternally Imprinted Gene Qpct

scientific article

Identification and characterization of long intergenic non-coding RNAs related to mouse liver development.

scientific article published on 11 July 2014

Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data

scientific article

Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development.

scientific article published on 27 November 2014

Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features

scientific article published on 13 September 2013

MetaImprint: an information repository of mammalian imprinted genes.

scientific article published on 21 May 2014

MiR-1188 at the imprinted Dlk1-Dio3 domain acts as a tumor suppressor in hepatoma cells.

scientific article

Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network

scientific article

QDMR: a quantitative method for identification of differentially methylated regions by entropy ⬇️

scientific article published on February 8, 2011

Quantitative epigenetic co-variation in CpG islands and co-regulation of developmental genes

scientific article published on January 2013

Recognition of histone acetylation by the GAS41 YEATS domain promotes H2A.Z deposition in non-small cell lung cancer.

scientific article published in January 2018

Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes

scientific article

The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation

scientific article published in Nature Communications

YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer.

scientific article

Z curve theory-based analysis of the dynamic nature of nucleosome positioning in Saccharomyces cerevisiae.

scientific article published on 16 August 2013

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