List of works - Paul N. Schofield

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

article

A common layer of interoperability for biomedical ontologies based on OWL EL.

scientific article

Aber-OWL: a framework for ontology-based data access in biology ⬇️

scientific article

An integrative, translational approach to understanding rare and orphan genetically based diseases

scientific article published on April 2013

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases ⬇️

scientific article published on 08 June 2015

Analyzing gene expression data in mice with the Neuro Behavior Ontology

scientific article

Best behaviour? Ontologies and the formal description of animal behaviour

scientific article published on 28 July 2015

Big data in radiation biology and epidemiology; an overview of the historical and contemporary landscape of data and biomaterial archives

scientific article published on 08 April 2019

Bio-acoustic signalling; exploring the potential of sound as a mediator of low-dose radiation and stress responses in the environment

scientific article published on 07 October 2020

Computational tools for comparative phenomics: the role and promise of ontologies

scientific article published on 20 July 2012

Contribution of model organism phenotypes to the computational identification of human disease genes

scientific article published in 2022

Datamining with Ontologies

scientific article published on January 2016

DeepPVP: phenotype-based prioritization of causative variants using deep learning

scholarly article published 2 May 2018

DeepPVP: phenotype-based prioritization of causative variants using deep learning

scientific article published on 06 February 2019

DermO; an ontology for the description of dermatologic disease

scientific article published on 13 June 2016

Entity/quality-based logical definitions for the human skeletal phenome using PATO

scientific article

Establishing the Japan-Store house of animal radiobiology experiments (J-SHARE), a large-scale necropsy and histopathology archive providing international access to important radiobiology data

scientific article published on 26 June 2019

Evolving paradigms for the biological response to low dose ionizing radiation; the role of epigenetics.

scientific article published on 20 November 2017

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice

scientific article published on 25 October 2011

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

scientific article

From tangled banks to toxic bunnies; a reflection on the issues involved in developing an ecosystem approach for environmental radiation protection

scientific article published on 13 July 2020

Improving ontologies by automatic reasoning and evaluation of logical definitions

scientific article

Integrating phenotype ontologies with PhenomeNET.

scientific article published on 19 December 2017

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

scientific article

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

scientific article published in January 2012

Living inside the box: environmental effects on mouse models of human disease

scientific article published on 01 October 2018

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

scientific article

Mouse genetic and phenotypic resources for human genetics

scientific article

Mouse model phenotypes provide information about human drug targets

scientific article published on 24 October 2013

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

scientific article published on 02 August 2009

MouseFinder: Candidate disease genes from mouse phenotype data

scientific article

Multi-faceted semantic clustering with text-derived phenotypes

scientific article published on 27 September 2021

Nail abnormalities identified in an ageing study of 30 inbred mouse strains

scientific article published on 04 September 2018

New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models

scientific article

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

scientific article published in Scientific Reports

Ontology-based prediction of cancer driver genes

scientific article published on 22 November 2019

Ontology-based validation and identification of regulatory phenotypes

scientific article published on 01 September 2018

PATHBIO: an international training program for precision mouse phenotyping

scientific article published on 22 February 2020

PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research

scientific article published on 3 June 2019

PhenomeNET: a whole-phenome approach to disease gene discovery

scientific article

Phenotype ontologies for mouse and man: bridging the semantic gap.

scientific article

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish

scientific article published on 25 October 2012

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies

scientific article published on 11 March 2019

Semantic prioritization of novel causative genomic variants

scientific article

Show and tell: disclosure and data sharing in experimental pathology

scientific article

Similarity-based search of model organism, disease and drug effect phenotypes

scientific article published on 19 February 2015

Systematic analysis of experimental phenotype data reveals gene functions

scientific article

Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program

scientific article

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

scientific article (publication date: 2014)

The Units Ontology: a tool for integrating units of measurement in science

scientific article

The anatomy of phenotype ontologies: principles, properties and applications.

scientific article published on 06 April 2017

The mouse pathology ontology, MPATH; structure and applications

scientific article published on 13 September 2013

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes

scientific article published on January 2012

The role of ontologies in biological and biomedical research: a functional perspective

scientific article

Using AberOWL for fast and scalable reasoning over BioPortal ontologies

scientific article

When a duck is not a duck; a new interdisciplinary synthesis for environmental radiation protection

scientific article published on 31 January 2018

List of works by Paul N. Schofield

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

A common layer of interoperability for biomedical ontologies based on OWL EL.

Aber-OWL: a framework for ontology-based data access in biology ⬇️

An integrative, translational approach to understanding rare and orphan genetically based diseases

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases ⬇️

Analyzing gene expression data in mice with the Neuro Behavior Ontology

Best behaviour? Ontologies and the formal description of animal behaviour

Big data in radiation biology and epidemiology; an overview of the historical and contemporary landscape of data and biomaterial archives

Bio-acoustic signalling; exploring the potential of sound as a mediator of low-dose radiation and stress responses in the environment

Computational tools for comparative phenomics: the role and promise of ontologies

Contribution of model organism phenotypes to the computational identification of human disease genes

Datamining with Ontologies

DeepPVP: phenotype-based prioritization of causative variants using deep learning

DeepPVP: phenotype-based prioritization of causative variants using deep learning

DermO; an ontology for the description of dermatologic disease

Entity/quality-based logical definitions for the human skeletal phenome using PATO

Establishing the Japan-Store house of animal radiobiology experiments (J-SHARE), a large-scale necropsy and histopathology archive providing international access to important radiobiology data

Evolving paradigms for the biological response to low dose ionizing radiation; the role of epigenetics.

Exploring the elephant: histopathology in high-throughput phenotyping of mutant mice

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences

From tangled banks to toxic bunnies; a reflection on the issues involved in developing an ecosystem approach for environmental radiation protection

Improving ontologies by automatic reasoning and evaluation of logical definitions

Integrating phenotype ontologies with PhenomeNET.

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning

Linking PharmGKB to phenotype studies and animal models of disease for drug repurposing.

Living inside the box: environmental effects on mouse models of human disease

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources

Mouse genetic and phenotypic resources for human genetics

Mouse model phenotypes provide information about human drug targets

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

MouseFinder: Candidate disease genes from mouse phenotype data

Multi-faceted semantic clustering with text-derived phenotypes

Nail abnormalities identified in an ageing study of 30 inbred mouse strains

New approaches to the representation and analysis of phenotype knowledge in human diseases and their animal models

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

Ontology-based prediction of cancer driver genes

Ontology-based validation and identification of regulatory phenotypes

Ontology-based validation and identification of regulatory phenotypes

PATHBIO: an international training program for precision mouse phenotyping

PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research

PhenomeNET: a whole-phenome approach to disease gene discovery

Phenotype ontologies for mouse and man: bridging the semantic gap.

Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies

Semantic prioritization of novel causative genomic variants

Show and tell: disclosure and data sharing in experimental pathology

Similarity-based search of model organism, disease and drug effect phenotypes

Systematic analysis of experimental phenotype data reveals gene functions

Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

The Units Ontology: a tool for integrating units of measurement in science

The anatomy of phenotype ontologies: principles, properties and applications.

The mouse pathology ontology, MPATH; structure and applications

The neurobehavior ontology: an ontology for annotation and integration of behavior and behavioral phenotypes

The role of ontologies in biological and biomedical research: a functional perspective

Using AberOWL for fast and scalable reasoning over BioPortal ontologies

When a duck is not a duck; a new interdisciplinary synthesis for environmental radiation protection