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List of works by Katja Baerenfaller

A Cautionary Tale on the Inclusion of Variable Posttranslational Modifications in Database-Dependent Searches of Mass Spectrometry Data.

scientific article

A long photoperiod relaxes energy management in Arabidopsis leaf six

scientific article published in 2015

A workflow to increase the detection rate of proteins from unsequenced organisms in high-throughput proteomics experiments

scientific article published on 01 December 2007

Arabidopsis proteomics: a simple and standardizable workflow for quantitative proteome characterization.

scientific article

Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity

scientific article published on 12 May 2022

Characterization of the "mismatch repairosome" and its role in the processing of modified nucleosides in vitro

scientific article published on 01 January 2006

Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level.

scientific article published in October 2012

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

scientific article

Correction: Krauss, J., et al. Epichloë Endophyte Infection Rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe. Microorganisms 2020, 8, 498

scientific article published on 21 October 2020

Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis

scientific article published on 3 August 2016

Epichloë Endophyte Infection rates and Alkaloid Content in Commercially Available Grass Seed Mixtures in Europe

scientific article published on 31 March 2020

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

scientific article published on 24 April 2008

Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.).

scientific article

Large-Scale Proteomics of the Cassava Storage Root and Identification of a Target Gene to Reduce Postharvest Deterioration

scientific article published on 29 May 2014

Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks

scientific article published on 17 April 2009

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data

scientific article (publication date: 2011)

Meselect - A Rapid and Effective Method for the Separation of the Main Leaf Tissue Types

scientific article published on 15 November 2016

Persistent mismatch repair deficiency following targeted correction of hMLH1.

scientific article published on 3 November 2006

Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism.

scientific article published in March 2018

Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins

scientific article

Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues

scientific article published on 28 May 2015

Protein abundance changes and ubiquitylation targets identified after inhibition of the proteasome with syringolin A.

scientific article published on 13 April 2014

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

scientific article

The HUPO initiative on Model Organism Proteomes, iMOP.

scientific article published in February 2012

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

article

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry

scientific article published on 25 April 2007

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana

scientific article

pep2pro: the high-throughput proteomics data processing, analysis, and visualization tool

scientific article

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