List of works - Manish Kumar

BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.

scientific article

CBMAR: a comprehensive β-lactamase molecular annotation resource.

scientific article

COPid: composition based protein identification.

scientific article published in January 2008

Comparative Protein Profiling of Intraphagosomal Expressed Proteins of Mycobacterium bovis BCG.

scientific article published on 6 November 2015

Comparative functional analysis of proteins containing low-complexity predicted amyloid regions

scientific article published on 30 October 2018

Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis

scientific article published on 20 February 2020

CrAgDb--a database of annotated chaperone repertoire in archaeal genomes

scientific article

CyclinPred: a SVM-based method for predicting cyclin protein sequences.

scientific article

Discerning novel drug targets for treating Mycobacterium avium ss. paratuberculosis-associated autoimmune disorders: an in silico approach

scientific article published on 08 September 2020

Hmrbase: a database of hormones and their receptors

scientific article published on 9 July 2009

Identification of DNA-binding proteins using support vector machines and evolutionary profiles

scientific article

Identification of family specific fingerprints in β-lactamase families

scientific article published on 11 February 2014

MALDI-TOF MS in clinical parasitology: applications, constraints and prospects.

scientific article

MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis

scientific article (publication date: 2015)

Molecular analysis of β-lactamase genes to understand their differential expression in strains of Yersinia enterocolitica biotype 1A

scientific article

OxDBase: a database of oxygenases involved in biodegradation.

scientific article

PredHSP: Sequence Based Proteome-Wide Heat Shock Protein Prediction and Classification Tool to Unlock the Stress Biology

scientific article

Prediction of RNA binding sites in a protein using SVM and PSSM profile.

scientific article published in April 2008

Prediction of Zinc Binding Sites in Proteins using Sequence Derived Information.

scientific article published on 14 December 2017

Prediction of mitochondrial proteins using support vector machine and hidden Markov model.

scientific article published on 8 December 2005

Prediction of nuclear proteins using SVM and HMM models

scientific article

Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies

scientific article published on 01 January 2009

PrionHome: a database of prions and other sequences relevant to prion phenomena

scientific article

Proteome-wide prediction and annotation of mitochondrial and sub-mitochondrial proteins by incorporating domain information

scientific article published on 11 October 2017

Public health implications of plasmid-mediated quinolone and aminoglycoside resistance genes in <i>Escherichia coli</i> inhabiting a major anthropogenic river of India

scientific article published in 2022

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

scientific article

Structural Variabilities in β-Lactamase (blaA) of Different Biovars of Yersinia enterocolitica: Implications for β-Lactam Antibiotic and β-Lactamase Inhibitor Susceptibilities

scientific article published on January 2014

Support vector machine based prediction of glutathione S-transferase proteins.

scientific article published in January 2007

Using molecular-mimicry-inducing pathways of pathogens as novel drug targets

scientific article published on 23 October 2018

ampD homologs in biotypes of Yersinia enterocolitica: Implications in regulation of chromosomal AmpC-type cephalosporinases

scientific article published on 30 January 2019

List of works by Manish Kumar

BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.

CBMAR: a comprehensive β-lactamase molecular annotation resource.

COPid: composition based protein identification.

Comparative Protein Profiling of Intraphagosomal Expressed Proteins of Mycobacterium bovis BCG.

Comparative functional analysis of proteins containing low-complexity predicted amyloid regions

Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis

CrAgDb--a database of annotated chaperone repertoire in archaeal genomes

CyclinPred: a SVM-based method for predicting cyclin protein sequences.

Discerning novel drug targets for treating Mycobacterium avium ss. paratuberculosis-associated autoimmune disorders: an in silico approach

Hmrbase: a database of hormones and their receptors

Identification of DNA-binding proteins using support vector machines and evolutionary profiles

Identification of family specific fingerprints in β-lactamase families

MALDI-TOF MS in clinical parasitology: applications, constraints and prospects.

MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis

Molecular analysis of β-lactamase genes to understand their differential expression in strains of Yersinia enterocolitica biotype 1A

OxDBase: a database of oxygenases involved in biodegradation.

PredHSP: Sequence Based Proteome-Wide Heat Shock Protein Prediction and Classification Tool to Unlock the Stress Biology

Prediction of RNA binding sites in a protein using SVM and PSSM profile.

Prediction of Zinc Binding Sites in Proteins using Sequence Derived Information.

Prediction of mitochondrial proteins using support vector machine and hidden Markov model.

Prediction of nuclear proteins using SVM and HMM models

Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies

PrionHome: a database of prions and other sequences relevant to prion phenomena

Proteome-wide prediction and annotation of mitochondrial and sub-mitochondrial proteins by incorporating domain information

Public health implications of plasmid-mediated quinolone and aminoglycoside resistance genes in <i>Escherichia coli</i> inhabiting a major anthropogenic river of India

SVM based prediction of RNA-binding proteins using binding residues and evolutionary information.

Structural Variabilities in β-Lactamase (blaA) of Different Biovars of Yersinia enterocolitica: Implications for β-Lactam Antibiotic and β-Lactamase Inhibitor Susceptibilities

Support vector machine based prediction of glutathione S-transferase proteins.

Using molecular-mimicry-inducing pathways of pathogens as novel drug targets

ampD homologs in biotypes of Yersinia enterocolitica: Implications in regulation of chromosomal AmpC-type cephalosporinases