List of works - Alexander Sodt

A Fast Implementation of Perfect Pairing and Imperfect Pairing Using the Resolution of the Identity Approximation.

scientific article

Amphipathic Helices-Wedge? Or Nae Nae?

scientific article published on January 2016

An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology

scientific article published on 01 September 2019

Building Blocks of the Outer Membrane: Calculating a General Elastic Energy Model for β-Barrel Membrane Proteins

scientific article published on 19 July 2018

Characterizing Residue-Bilayer Interactions Using Gramicidin A as a Scaffold and Tryptophan Substitutions as Probes

scientific article published on 4 September 2017

Cholesterol-Dependent Bending Energy Is Important in Cholesterol Distribution of the Plasma Membrane

scientific article published on 02 April 2019

Computing the Free Energy along a Reaction Coordinate Using Rigid Body Dynamics

scientific article published on 15 August 2014

Depth of α-synuclein in a bilayer determined by fluorescence, neutron reflectometry, and computation.

scientific article published on 7 February 2012

Driving forces for transmembrane alpha-helix oligomerization.

scientific article

Hartree-Fock exchange computed using the atomic resolution of the identity approximation.

scientific article published in March 2008

Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins

scientific article published on 21 March 2022

Linear scaling density fitting.

scientific article

Localized orbital theory and ammonia triborane.

scientific article published on 29 August 2007

Multiple environment single system quantum mechanical/molecular mechanical (MESS-QM/MM) calculations. 1. Estimation of polarization energies

scientific article published on 30 October 2014

Nonadditive Compositional Curvature Energetics of Lipid Bilayers.

scientific article published on 23 September 2016

Palmitoylation contributes to membrane curvature in Influenza A virus assembly and hemagglutinin-mediated membrane fusion

scientific article published on 09 August 2017

Predicting accurate electronic excitation transfer rates via marcus theory with Boys or Edmiston-Ruedenberg localized diabatization.

scientific article

Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

scientific article published on 5 November 2012

Simple differences in the protein-membrane attachment mechanism have functional consequences for surface mechanics

scientific article published on 01 October 2019

The Curvature Induction of Surface-Bound Antimicrobial Peptides Piscidin 1 and Piscidin 3 Varies with Lipid Chain Length.

scientific article published on 8 October 2014

The limits of local correlation theory: electronic delocalization and chemically smooth potential energy surfaces.

scientific article published in January 2008

The molecular structure of the liquid-ordered phase of lipid bilayers.

scientific article

The tension of a curved surface from simulation

scientific article published on December 2012

Unrestricted perfect pairing: the simplest wave-function-based model chemistry beyond mean field.

scientific article published in October 2005

List of works by Alexander Sodt

A Fast Implementation of Perfect Pairing and Imperfect Pairing Using the Resolution of the Identity Approximation.

Amphipathic Helices-Wedge? Or Nae Nae?

An implicit lipid model for efficient reaction-diffusion simulations of protein binding to surfaces of arbitrary topology

Building Blocks of the Outer Membrane: Calculating a General Elastic Energy Model for β-Barrel Membrane Proteins

Characterizing Residue-Bilayer Interactions Using Gramicidin A as a Scaffold and Tryptophan Substitutions as Probes

Cholesterol-Dependent Bending Energy Is Important in Cholesterol Distribution of the Plasma Membrane

Computing the Free Energy along a Reaction Coordinate Using Rigid Body Dynamics

Depth of α-synuclein in a bilayer determined by fluorescence, neutron reflectometry, and computation.

Driving forces for transmembrane alpha-helix oligomerization.

Hartree-Fock exchange computed using the atomic resolution of the identity approximation.

Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins

Linear scaling density fitting.

Localized orbital theory and ammonia triborane.

Multiple environment single system quantum mechanical/molecular mechanical (MESS-QM/MM) calculations. 1. Estimation of polarization energies

Nonadditive Compositional Curvature Energetics of Lipid Bilayers.

Palmitoylation contributes to membrane curvature in Influenza A virus assembly and hemagglutinin-mediated membrane fusion

Predicting accurate electronic excitation transfer rates via marcus theory with Boys or Edmiston-Ruedenberg localized diabatization.

Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

Simple differences in the protein-membrane attachment mechanism have functional consequences for surface mechanics

The Curvature Induction of Surface-Bound Antimicrobial Peptides Piscidin 1 and Piscidin 3 Varies with Lipid Chain Length.

The limits of local correlation theory: electronic delocalization and chemically smooth potential energy surfaces.

The molecular structure of the liquid-ordered phase of lipid bilayers.

The tension of a curved surface from simulation

Unrestricted perfect pairing: the simplest wave-function-based model chemistry beyond mean field.