List of works - Craig Herbold

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

scientific article published on 25 September 2019

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

scientific article published on 16 July 2015

Acidobacteria are active and abundant members of diverse atmospheric H2-oxidizing communities detected in temperate soils

scientific article published on 06 October 2020

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics

scientific article

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

scientific article

An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing

scientific article published on 20 May 2021

Application of stable-isotope labelling techniques for the detection of active diazotrophs

scientific article published on 13 October 2017

Author Correction: Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

scientific article published on 01 August 2018

Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds

scientific article

Biotransformation of Two Pharmaceuticals by the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis

scientific article

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

scientific article published on 22 September 2017

Characterisation of bacterioplankton communities in the meltwater ponds of Bratina Island, Victoria Land, Antarctica

article by Stephen D J Archer et al published August 2014 in FEMS Microbiology Ecology

Characterization of the First " Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

scientific article published on 10 July 2018

Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation.

scientific article

Complete nitrification by Nitrospira bacteria

scientific article

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought

scientific article published on 07 August 2020

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

scientific article published on 14 February 2018

Cyanate as an energy source for nitrifiers

scientific article

Cytochrome c unfolding on an anionic surface

scientific article published on 01 November 1999

DNA-foraging bacteria in the seafloor

Dissolved iron cycling in the subterranean estuary of a coastal bay: Waquoit Bay, Massachusetts.

scientific article published in October 2002

Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources.

scientific article

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics.

scientific article published on 2 December 2015

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

scientific article

Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community

scientific article published on 06 September 2021

Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP - A Bioinformatics Pipeline for Analyzing nifH Amplicon Data.

scientific article

Evidence excluding the root of the tree of life from the actinobacteria.

scientific article

Evidence for a gram-positive, eubacterial root of the tree of life

scientific article

Evidence for a new root of the tree of life.

scientific article

Evidence of global-scale aeolian dispersal and endemism in isolated geothermal microbial communities of Antarctica

scientific article published on 20 May 2014

Evidence that the root of the tree of life is not within the Archaea.

scientific article

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

scientific article

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons

scientific article published on 28 August 2019

Genome beginnings: rooting the tree of life

scientific article published in August 2009

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils

scientific article published on 27 August 2018

Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments

scientific article published on 14 June 2021

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

scientific article

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

scientific article

Hair eruption initiates and commensal skin microbiota aggravate adverse events of anti-EGFR therapy

scientific article published on 01 December 2019

Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica

scientific article

Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling

scientific article published on 12 May 2021

Peatland Acidobacteria with a dissimilatory sulfur metabolism

scientific article published on 23 February 2018

Peatland Acidobacteria with a dissimilatory sulfur metabolism

article published in 2017

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

scientific article

Plant roots affect free-living diazotroph communities in temperate grassland soils despite decades of fertilization

scientific article published in 2024

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

scientific article published on 07 February 2020

Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut

scientific article published on 31 March 2021

Widespread soil bacterium that oxidizes atmospheric methane

scientific article published on 08 April 2019

List of works by Craig Herbold

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

Acidobacteria are active and abundant members of diverse atmospheric H2-oxidizing communities detected in temperate soils

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing

Application of stable-isotope labelling techniques for the detection of active diazotrophs

Author Correction: Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds

Biotransformation of Two Pharmaceuticals by the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

Characterisation of bacterioplankton communities in the meltwater ponds of Bratina Island, Victoria Land, Antarctica

Characterization of the First " Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation.

Complete nitrification by Nitrospira bacteria

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland.

Cyanate as an energy source for nitrifiers

Cytochrome c unfolding on an anionic surface

DNA-foraging bacteria in the seafloor

Dissolved iron cycling in the subterranean estuary of a coastal bay: Waquoit Bay, Massachusetts.

Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources.

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics.

Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling

Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community

Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP - A Bioinformatics Pipeline for Analyzing nifH Amplicon Data.

Evidence excluding the root of the tree of life from the actinobacteria.

Evidence for a gram-positive, eubacterial root of the tree of life

Evidence for a new root of the tree of life.

Evidence of global-scale aeolian dispersal and endemism in isolated geothermal microbial communities of Antarctica

Evidence that the root of the tree of life is not within the Archaea.

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons

Genome beginnings: rooting the tree of life

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils

Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments

Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

Hair eruption initiates and commensal skin microbiota aggravate adverse events of anti-EGFR therapy

Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica

Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling

Peatland Acidobacteria with a dissimilatory sulfur metabolism

Peatland Acidobacteria with a dissimilatory sulfur metabolism

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Plant roots affect free-living diazotroph communities in temperate grassland soils despite decades of fertilization

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut

Widespread soil bacterium that oxidizes atmospheric methane