List of works - Tomoaki Sakamoto

A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads

scientific article published on 3 May 2015

A chromosome-level genome assembly for the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence

scientific article published on 18 April 2024

A missense mutation in the NSF gene causes abnormal Golgi morphology in Arabidopsis thaliana

scientific article published on 2 February 2018

Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress

scientific article published on 19 February 2018

DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem

scientific article published on 14 August 2020

ERdj3B-Mediated Quality Control Maintains Anther Development at High Temperatures

scientific article published on 24 January 2020

Effects of unilateral compound-eye removal on the photoperiodic responses of nymphal development in the cricket Modicogryllus siamensis

scientific article published in June 2007

FE, a phloem-specific Myb-related protein, promotes flowering through transcriptional activation of FLOWERING LOCUS T and FLOWERING LOCUS T INTERACTING PROTEIN 1.

scientific article

FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice

scientific article

Functional analysis of the circadian clock gene period by RNA interference in nymphal crickets Gryllus bimaculatus

scientific article published in May 2009

Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Co-operatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.

scientific article

High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq

scientific article published on 11 April 2013

Identification of Arabidopsis genic and non-genic promoters by paired-end sequencing of TSS tags

scientific article

Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing

scientific article published on 01 January 2014

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing

scientific article published on 11 March 2011

Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis.

scientific article published on 11 February 2018

Molecular and Biochemical Differences in Leaf Explants and the Implication for Regeneration Ability in Rorippa aquatica (Brassicaceae)

scientific article published on 15 October 2020

Plant Temperature Sensors

article

Protein S-nitrosylation regulates xylem vessel cell differentiation in Arabidopsis

scientific article published on 13 October 2017

RNA interference of the clock gene period disrupts circadian rhythms in the cricket Gryllus bimaculatus

scientific article published in August 2008

SOG1, a plant-specific master regulator of DNA damage responses, originated from nonvascular land plants

scientific article published on 27 December 2021

The Plasma Membrane H+-ATPase AHA1 Plays a Major Role in Stomatal Opening in Response to Blue Light

scientific article

The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis

scientific article published on 7 July 2016

The Tinkerbell (Tink) Mutation Identifies the Dual-Specificity MAPK Phosphatase INDOLE-3-BUTYRIC ACID-RESPONSE5 (IBR5) as a Novel Regulator of Organ Size in Arabidopsis

scientific article published on 6 July 2015

The clock gene period plays an essential role in photoperiodic control of nymphal development in the cricket Modicogryllus siamensis

scientific article published in October 2009

Transcriptional Framework of Male Gametogenesis in the Liverwort Marchantia polymorpha L.

scientific article published on 8 February 2016

Two different rickettsial bacteria invading Volvox carteri

scientific article

List of works by Tomoaki Sakamoto

A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads

A chromosome-level genome assembly for the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence

A missense mutation in the NSF gene causes abnormal Golgi morphology in Arabidopsis thaliana

Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress

DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem

ERdj3B-Mediated Quality Control Maintains Anther Development at High Temperatures

Effects of unilateral compound-eye removal on the photoperiodic responses of nymphal development in the cricket Modicogryllus siamensis

FE, a phloem-specific Myb-related protein, promotes flowering through transcriptional activation of FLOWERING LOCUS T and FLOWERING LOCUS T INTERACTING PROTEIN 1.

FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice

Functional analysis of the circadian clock gene period by RNA interference in nymphal crickets Gryllus bimaculatus

Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Co-operatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.

High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq

Identification of Arabidopsis genic and non-genic promoters by paired-end sequencing of TSS tags

Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing

Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis.

Molecular and Biochemical Differences in Leaf Explants and the Implication for Regeneration Ability in Rorippa aquatica (Brassicaceae)

Plant Temperature Sensors

Protein S-nitrosylation regulates xylem vessel cell differentiation in Arabidopsis

RNA interference of the clock gene period disrupts circadian rhythms in the cricket Gryllus bimaculatus

SOG1, a plant-specific master regulator of DNA damage responses, originated from nonvascular land plants

The Plasma Membrane H+-ATPase AHA1 Plays a Major Role in Stomatal Opening in Response to Blue Light

The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis

The Tinkerbell (Tink) Mutation Identifies the Dual-Specificity MAPK Phosphatase INDOLE-3-BUTYRIC ACID-RESPONSE5 (IBR5) as a Novel Regulator of Organ Size in Arabidopsis

The clock gene period plays an essential role in photoperiodic control of nymphal development in the cricket Modicogryllus siamensis

Transcriptional Framework of Male Gametogenesis in the Liverwort Marchantia polymorpha L.

Two different rickettsial bacteria invading Volvox carteri