List of works - Andreas Beyer

A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors

scientific article published on 16 July 2019

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

scientific article

A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.

scientific article published on 15 September 2017

A random forest approach to capture genetic effects in the presence of population structure

scientific article

Accounting for redundancy when integrating gene interaction databases

scientific article

Assessing computational methods for transcription factor target gene identification based on ChIP-seq data

scientific article

Assessing persistence and long-range transport potential of current-use pesticides

scientific article published on 01 December 2009

Associations between DNA methylation and schizophrenia-related intermediate phenotypes - a gene set enrichment analysis

scientific article

Biological mechanisms of aging predict age-related disease co-occurrence in patients

scientific article published on 08 March 2022

Cis-regulatory evolution spotlights species differences in the adaptive potential of gene expression plasticity

scientific article published on 07 June 2021

Coiled-coil proteins facilitated the functional expansion of the centrosome

scientific article

Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.

scientific article published on 7 June 2019

Convergent network effects along the axis of gene expression during prostate cancer progression

scientific article published on 14 December 2020

Data-driven assessment of eQTL mapping methods

scientific article

Detection and interpretation of expression quantitative trait loci (eQTL).

scientific article

Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens

scientific article

Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

scientific article published on 28 March 2017

Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3

scientific article published on 21 June 2021

Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity

article

Impact of natural genetic variation on gene expression dynamics.

scientific article

Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

scientific article published on 03 October 2016

Integrative analysis of low- and high-resolution eQTL

scientific article

Landscape of nuclear transport receptor cargo specificity

scientific article published on 18 December 2017

Large-scale de novo prediction of physical protein-protein association ⬇️

scientific article

Meiotic cohesin SMC1β provides prophase I centromeric cohesion and is required for multiple synapsis-associated functions.

scientific article

Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers

scientific article published on 01 May 2018

NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation

scientific article published on 03 March 2022

On the Dependency of Cellular Protein Levels on mRNA Abundance

scientific article published on April 2016

Optimizing network propagation for multi-omics data integration

scientific article published on 11 November 2021

Predicting the fission yeast protein interaction network

scientific article

Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance

scientific article published on 01 April 2020

Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

scientific article

Regulatory network-based imputation of dropouts in single-cell RNA sequencing data

scientific article published on 17 February 2022

Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data

scientific article

STITCH 2: an interaction network database for small molecules and proteins

scientific article (publication date: 2010)

Single nephron proteomes connect morphology and function in proteinuric kidney disease.

scientific article published on 9 March 2018

Stage-specific binding profiles of cohesin in resting and activated B lymphocytes suggest a role for cohesin in immunoglobulin class switching and maturation

scientific article

Stress induces remodelling of yeast interaction and co-expression networks

scientific article published on 7 March 2013

Systematic Detection of Epistatic Interactions Based on Allele Pair Frequencies ⬇️

scientific article published on February 9, 2012

Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.

scientific article published on 31 October 2017

Teamwork: improved eQTL mapping using combinations of machine learning methods

scientific article

Testing and Validation of Computational Methods for Mass Spectrometry

scientific article published on 9 November 2015

The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan

scientific article

The impact of genomic variation on protein phosphorylation states and regulatory networks

scientific article published on 01 May 2022

The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury

scientific article published on 03 December 2018

Tissue-specific modulation of gene expression in response to lowered insulin signalling in <i>Drosophila</i>

scientific article published on 21 April 2021

Topology of functional networks predicts physical binding of proteins.

scientific article published on 19 June 2012

Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure

scientific article

regNet: An R package for network-based propagation of gene expression alterations.

scientific article published on 31 August 2017

List of works by Andreas Beyer

A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.

A random forest approach to capture genetic effects in the presence of population structure

Accounting for redundancy when integrating gene interaction databases

Assessing computational methods for transcription factor target gene identification based on ChIP-seq data

Assessing persistence and long-range transport potential of current-use pesticides

Associations between DNA methylation and schizophrenia-related intermediate phenotypes - a gene set enrichment analysis

Biological mechanisms of aging predict age-related disease co-occurrence in patients

Cis-regulatory evolution spotlights species differences in the adaptive potential of gene expression plasticity

Coiled-coil proteins facilitated the functional expansion of the centrosome

Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.

Convergent network effects along the axis of gene expression during prostate cancer progression

Data-driven assessment of eQTL mapping methods

Detection and interpretation of expression quantitative trait loci (eQTL).

Detection of COPB2 as a KRAS synthetic lethal partner through integration of functional genomics screens

Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism

Genomic imprinting in mouse blastocysts is predominantly associated with H3K27me3

Hepatic gene body hypermethylation is a shared epigenetic signature of murine longevity

Impact of natural genetic variation on gene expression dynamics.

Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis

Integrative analysis of low- and high-resolution eQTL

Landscape of nuclear transport receptor cargo specificity

Large-scale de novo prediction of physical protein-protein association ⬇️

Meiotic cohesin SMC1β provides prophase I centromeric cohesion and is required for multiple synapsis-associated functions.

Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers

NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation

On the Dependency of Cellular Protein Levels on mRNA Abundance

Optimizing network propagation for multi-omics data integration

Predicting the fission yeast protein interaction network

Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance

Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

Regulatory network-based imputation of dropouts in single-cell RNA sequencing data

Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data

STITCH 2: an interaction network database for small molecules and proteins

Single nephron proteomes connect morphology and function in proteinuric kidney disease.

Stage-specific binding profiles of cohesin in resting and activated B lymphocytes suggest a role for cohesin in immunoglobulin class switching and maturation

Stress induces remodelling of yeast interaction and co-expression networks

Systematic Detection of Epistatic Interactions Based on Allele Pair Frequencies ⬇️

Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.

Teamwork: improved eQTL mapping using combinations of machine learning methods

Testing and Validation of Computational Methods for Mass Spectrometry

The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan

The impact of genomic variation on protein phosphorylation states and regulatory networks

The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury

Tissue-specific modulation of gene expression in response to lowered insulin signalling in <i>Drosophila</i>

Topology of functional networks predicts physical binding of proteins.

Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure

regNet: An R package for network-based propagation of gene expression alterations.