List of works - Mark Ebbert

A comparison of PAM50 intrinsic subtyping with immunohistochemistry and clinical prognostic factors in tamoxifen-treated estrogen receptor-positive breast cancer

scientific article

A phase II study of UCN-01 in combination with irinotecan in patients with metastatic triple negative breast cancer.

scientific article

Agreement in risk prediction between the 21-gene recurrence score assay (Oncotype DX®) and the PAM50 breast cancer intrinsic Classifier™ in early-stage estrogen receptor-positive breast cancer.

scientific article published on 14 March 2012

An Epigenetic Spin to ALS and FTD.

scientific article published in January 2018

Application of a new informatics tool for contamination screening in the HIV sequencing laboratory.

scientific article published on 11 April 2013

Assessment of TREM2 rs75932628 association with Alzheimer's disease in a population-based sample: the Cache County Study.

scientific article published on 12 July 2013

Bridging the gap between statistical and biological epistasis in Alzheimer's disease

scientific article

Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans.

scientific article published on 23 December 2011

Conserved DNA methylation combined with differential frontal cortex and cerebellar expression distinguishes C9orf72-associated and sporadic ALS, and implicates SERPINA1 in disease

scientific article published on 14 August 2017

Corticobasal degeneration with TDP-43 pathology presenting with progressive supranuclear palsy syndrome: a distinct clinicopathologic subtype

scientific article published on 20 June 2018

DNA reference alignment benchmarks based on tertiary structure of encoded proteins

scientific article published on 8 August 2007

Evaluation of the Abbott RealTime HCV genotype II plus RUO (PLUS) assay with reference to core and NS5B sequencing.

scientific article

Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction

scientific article

Genetic discoveries in AD using CSF amyloid and tau.

scientific article published on March 2014

Genetics of Alzheimer's disease

article

Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk

scientific article published on 5 October 2015

Intrinsic subtypes from PAM50 gene expression assay in a population-based breast cancer cohort: differences by age, race, and tumor characteristics.

scientific article

Liver kinase B1 inhibits the expression of inflammation-related genes postcontraction in skeletal muscle

scientific article published on 21 January 2016

Microglial translational profiling reveals a convergent APOE pathway from aging, amyloid, and tau.

scientific article published on 6 August 2018

PAM50 breast cancer subtyping by RT-qPCR and concordance with standard clinical molecular markers.

scientific article

Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties

article

Poly(GR) impairs protein translation and stress granule dynamics in C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

scientific article published on 25 June 2018

Population-based analysis of cholesteryl ester transfer protein identifies association between I405V and cognitive decline: the Cache County Study

scientific article

Presenilin E318G variant and Alzheimer's disease risk: the Cache County study

scientific article

Responsiveness of intrinsic subtypes to adjuvant anthracycline substitution in the NCIC.CTG MA.5 randomized trial.

scientific article published on 20 February 2012

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.

scientific article

Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight

article

Systematic analysis of dark and camouflaged genes: disease-relevant genes hiding in plain sight: Supplemental figures

article

TRIM29 functions as a tumor suppressor in nontumorigenic breast cells and invasive ER+ breast cancer.

scientific article

Tumor grafts derived from women with breast cancer authentically reflect tumor pathology, growth, metastasis and disease outcomes

scientific article

List of works by Mark Ebbert

A comparison of PAM50 intrinsic subtyping with immunohistochemistry and clinical prognostic factors in tamoxifen-treated estrogen receptor-positive breast cancer

A phase II study of UCN-01 in combination with irinotecan in patients with metastatic triple negative breast cancer.

Agreement in risk prediction between the 21-gene recurrence score assay (Oncotype DX®) and the PAM50 breast cancer intrinsic Classifier™ in early-stage estrogen receptor-positive breast cancer.

An Epigenetic Spin to ALS and FTD.

Application of a new informatics tool for contamination screening in the HIV sequencing laboratory.

Assessment of TREM2 rs75932628 association with Alzheimer's disease in a population-based sample: the Cache County Study.

Bridging the gap between statistical and biological epistasis in Alzheimer's disease

Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans.

Conserved DNA methylation combined with differential frontal cortex and cerebellar expression distinguishes C9orf72-associated and sporadic ALS, and implicates SERPINA1 in disease

Corticobasal degeneration with TDP-43 pathology presenting with progressive supranuclear palsy syndrome: a distinct clinicopathologic subtype

DNA reference alignment benchmarks based on tertiary structure of encoded proteins

Evaluation of the Abbott RealTime HCV genotype II plus RUO (PLUS) assay with reference to core and NS5B sequencing.

Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction

Genetic discoveries in AD using CSF amyloid and tau.

Genetics of Alzheimer's disease

Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk

Intrinsic subtypes from PAM50 gene expression assay in a population-based breast cancer cohort: differences by age, race, and tumor characteristics.

Liver kinase B1 inhibits the expression of inflammation-related genes postcontraction in skeletal muscle

Microglial translational profiling reveals a convergent APOE pathway from aging, amyloid, and tau.

PAM50 breast cancer subtyping by RT-qPCR and concordance with standard clinical molecular markers.

Pharmacogenomics: analysing SNPs in the CYP2D6 gene using amino acid properties

Poly(GR) impairs protein translation and stress granule dynamics in C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis

Population-based analysis of cholesteryl ester transfer protein identifies association between I405V and cognitive decline: the Cache County Study

Presenilin E318G variant and Alzheimer's disease risk: the Cache County study

Responsiveness of intrinsic subtypes to adjuvant anthracycline substitution in the NCIC.CTG MA.5 randomized trial.

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.

Systematic analysis of dark and camouflaged genes reveals disease-relevant genes hiding in plain sight

Systematic analysis of dark and camouflaged genes: disease-relevant genes hiding in plain sight: Supplemental figures

TRIM29 functions as a tumor suppressor in nontumorigenic breast cells and invasive ER+ breast cancer.

Tumor grafts derived from women with breast cancer authentically reflect tumor pathology, growth, metastasis and disease outcomes