List of works - Leena Salmela

Accurate self-correction of errors in long reads using de Bruijn graphs

scientific article published on 6 June 2016

Aligning optical maps to de Bruijn graphs

scientific article published on 01 September 2019

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

scientific article published on 11 February 2016

Correcting errors in short reads by multiple alignments ⬇️

scientific article published on April 5, 2011

Correction of sequencing errors in a mixed set of reads

scientific article

Error correcting optical mapping data.

scientific article

Extraction of Long k-mers Using Spaced Seeds

scientific article published on 16 September 2021

Fast and accurate correction of optical mapping data via spaced seeds

scientific article published on 01 February 2020

Fast scaffolding with small independent mixed integer programs

scientific article published on 13 October 2011

Flight-induced changes in gene expression in the Glanville fritillary butterfly.

scientific article published on 31 August 2015

Gap Filling as Exact Path Length Problem.

scientific article published on 9 March 2016

Kermit: linkage map guided long read assembly

scientific article published on 20 March 2019

LoRDEC: accurate and efficient long read error correction.

scientific article published on 26 August 2014

Normalized N50 assembly metric using gap-restricted co-linear chaining

scientific article

Optical map guided genome assembly

scientific article published on 06 July 2020

Safely Filling Gaps with Partial Solutions Common to All Solutions

scientific article published on 15 January 2018

Space-Efficient Indexing of Spaced Seeds for Accurate Overlap Computation of Raw Optical Mapping Data

scientific article published on 31 May 2021

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

scientific article

Variant genotyping with gap filling

scientific article published on 8 September 2017

List of works by Leena Salmela

Accurate self-correction of errors in long reads using de Bruijn graphs

Aligning optical maps to de Bruijn graphs

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

Correcting errors in short reads by multiple alignments ⬇️

Correction of sequencing errors in a mixed set of reads

Error correcting optical mapping data.

Extraction of Long k-mers Using Spaced Seeds

Fast and accurate correction of optical mapping data via spaced seeds

Fast scaffolding with small independent mixed integer programs

Flight-induced changes in gene expression in the Glanville fritillary butterfly.

Gap Filling as Exact Path Length Problem.

Kermit: linkage map guided long read assembly

LoRDEC: accurate and efficient long read error correction.

Normalized N50 assembly metric using gap-restricted co-linear chaining

Optical map guided genome assembly

Safely Filling Gaps with Partial Solutions Common to All Solutions

Space-Efficient Indexing of Spaced Seeds for Accurate Overlap Computation of Raw Optical Mapping Data

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

Variant genotyping with gap filling

mpscan: Fast Localisation of Multiple Reads in Genomes