List of works by Shawn W Polson

A reference genome of the Chinese hamster based on a hybrid assembly strategy

article

Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents

scientific article published on 17 December 2020

An Integrative Approach for Interpretation of Clinical NGS Genomic Variant Data.

scientific article published in May 2014

An integrated approach for analyzing clinical genomic variant data from next-generation sequencing.

scientific article

Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities

scientific article published on 29 April 2020

CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes

article

Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome

scientific article

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

scientific article

Complete Genome Sequence of Vibrio parahaemolyticus Environmental Strain UCM-V493.

scientific article published on 13 March 2014

Complete Genome Sequence of sp. Strain 10M-3C3, Isolated from an Extremely Phosphorus-Poor Lake

article

Deletion of Fibroblast growth factor 9 globally and in skeletal muscle results in enlarged tuberosities at sites of deltoid tendon attachments

scientific article published on 16 June 2021

Development of novel filtering criteria to analyze RNA-sequencing data obtained from the murine ocular lens during embryogenesis

scientific article

Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities

scientific article published on 24 July 2013

Direct assessment of viral diversity in soils by random PCR amplification of polymorphic DNA.

scientific article

Draft Genome Sequence of a Natural Root Isolate, Bacillus subtilis UD1022, a Potential Plant Growth-Promoting Biocontrol Agent

scientific article published on 9 July 2015

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA

scientific article published on 23 September 2011

Evaluation of two approaches for assessing the genetic similarity of virioplankton populations as defined by genome size

scientific article

Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum

scientific article published on 03 April 2014

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

scientific article

High-fat-diet-mediated dysbiosis promotes intestinal carcinogenesis independently of obesity

scientific article

Impacts of poultry house environment on poultry litter bacterial community composition

scientific article

Light Modulates the Physiology of Nonphototrophic Actinobacteria

scientific article published on 24 April 2019

Multiple Megaplasmids Confer Extremely High Levels of Metal Tolerance in Alteromonas Strains

scientific article published on 21 January 2020

No-boundary thinking in bioinformatics research

scientific article

Polygenic inheritance of cryptorchidism susceptibility in the LE/orl rat.

scientific article

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

scientific article

Profiling conserved microRNA expression in recombinant CHO cell lines using Illumina sequencing.

scientific article published on 23 January 2012

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses

scientific article

Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton.

scientific article

SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes

scientific article

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

scientific article

The etiology of white pox, a lethal disease of the Caribbean elkhorn coral, Acropora palmata

scientific article

Unraveling Fe(II)-Oxidizing Mechanisms in a Facultative Fe(II) Oxidizer, Sideroxydans lithotrophicus Strain ES-1, via Culturing, Transcriptomics, and Reverse Transcription-Quantitative PCR

scientific article published on 17 November 2021

Unraveling the viral tapestry (from inside the capsid out).

scientific article published on 18 January 2011

VIROME: a standard operating procedure for analysis of viral metagenome sequences.

scientific article

Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Zetaproteobacteria Iron Mats at Marine Hydrothermal Vents

scientific article published on 18 February 2020

Whole-Genome Sequence of the Cyanobacterium Synechococcus sp. Strain WH 8101

scientific article published on 20 February 2020

Whole-Genome Sequences of Two Pseudoalteromonas piscicida Strains, DE1-A and DE2-A, with Strong Antibacterial Activity against Vibrio vulnificus

scientific article published on 03 January 2019

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