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List of works by Matti Kankainen

Adhesive polypeptides of Staphylococcus aureus identified using a novel secretion library technique in Escherichia coli.

scientific article

Aggressive natural killer-cell leukemia mutational landscape and drug profiling highlight JAK-STAT signaling as therapeutic target.

scientific article published on 19 April 2018

Association of tamoxifen resistance and lipid reprogramming in breast cancer

scientific article published on 24 August 2018

BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins

scientific article

Birch pollen allergen immunotherapy reprograms nasal epithelial transcriptome and recovers microbial diversity

scientific article published on 12 February 2019

Characterization of p190-Bcr-Abl chronic myeloid leukemia reveals specific signaling pathways and therapeutic targets

scientific article published on 09 November 2020

Characterizing the Key Metabolic Pathways of the Neonatal Mouse Heart Using a Quantitative Combinatorial Omics Approach

scientific article

Comparative Analysis of Whole-Genome Sequences of Influenza A(H1N1)pdm09 Viruses Isolated from Hospitalized and Nonhospitalized Patients Identifies Missense Mutations That Might Be Associated with Patient Hospital Admissions in Finland during 2009 t

scientific article published on 30 July 2015

Comparative Exoprotein Profiling of Different Staphylococcus epidermidis Strains Reveals Potential Link between Nonclassical Protein Export and Virulence

scientific article published on 02 June 2014

Comparative Proteome Cataloging of Lactobacillus rhamnosus Strains GG and Lc705

scientific article published on 17 June 2011

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

scientific article

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis.

scientific article

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.

scientific article published on 10 July 2014

DANCER: a program for digital anatomical reconstruction of gene expression data.

scientific article

Donor Simvastatin Treatment in Heart Transplantation

scientific article published on 29 July 2019

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG

scientific article published on 16 November 2011

Effects of ellagitannin-rich berries on blood lipids, gut microbiota, and urolithin production in human subjects with symptoms of metabolic syndrome

scientific article

Functional genomics provides insights into the role of Propionibacterium freudenreichii ssp. shermanii JS in cheese ripening.

scientific article published on 26 September 2016

Fusarium mycotoxin enniatin B: Cytotoxic effects and changes in gene expression profile

scientific article

Genome sequence of Lactobacillus crispatus ST1.

scientific article published on 30 April 2010

Genome-Wide Analysis of Evolutionary Markers of Human Influenza A(H1N1)pdm09 and A(H3N2) Viruses May Guide Selection of Vaccine Strain Candidates

scientific article

Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains.

scientific article published on 18 July 2014

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium.

scientific article published on September 2011

Hierarchical clustering in evaluating inflammatory upper airway phenotypes; increased symptoms in adults with allergic multimorbidity

scientific article published on 04 June 2019

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast.

scientific article

Immunological data from cancer patients treated with Ad5/3-E2F-Δ24-GMCSF suggests utility for tumor immunotherapy ⬇️

scientific article

LOCP--locating pilus operons in gram-positive bacteria.

scientific article published on 4 March 2009

Local treatment of a pleural mesothelioma tumor with ONCOS-102 induces a systemic antitumor CD8+ T-cell response, prominent infiltration of CD8+ lymphocytes and Th1 type polarization.

scientific article published on November 2014

Loss of Rad51c accelerates tumourigenesis in sebaceous glands of Trp53-mutant mice.

scientific article published in January 2015

MATLIGN: a motif clustering, comparison and matching tool.

scientific article

MPEA—metabolite pathway enrichment analysis

article

Mucosal adhesion properties of the probiotic Lactobacillus rhamnosus GG SpaCBA and SpaFED pilin subunits.

scientific article

Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancer

scientific article published on 08 July 2019

Nonpathogenic Lactobacillus rhamnosus activates the inflammasome and antiviral responses in human macrophages ⬇️

scientific article published on August 16, 2012

POBO, transcription factor binding site verification with bootstrapping.

scientific article published on July 2004

POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets

scientific article

Phase I study with ONCOS-102 for the treatment of solid tumors - an evaluation of clinical response and exploratory analyses of immune markers.

scientific article published on 15 March 2016

Probiotic Lactobacillus rhamnosus downregulates FCER1 and HRH4 expression in human mast cells.

scientific article

Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy

scientific article published on 08 October 2020

Proteome analysis of Lactobacillus rhamnosus GG using 2-D DIGE and mass spectrometry shows differential protein production in laboratory and industrial-type growth media.

scientific article published in November 2009

Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG.

scientific article

Pseudoexons provide a mechanism for allele-specific expression of APC in familial adenomatous polyposis

scientific article

RUNX1 mutations in blast-phase chronic myeloid leukemia associate with distinct phenotypes, transcriptional profiles, and drug responses

scientific article published on 11 August 2020

Systematic drug sensitivity testing reveals synergistic growth inhibition by dasatinib or mTOR inhibitors with paclitaxel in ovarian granulosa cell tumor cells

scientific article published on 16 January 2017

Systems‐level analysis of clinically different phenotypes of juvenile nasopharyngeal angiofibromas ⬇️

scientific article published on September 10, 2012

T and NK cell abundance defines two distinct subgroups of renal cell carcinoma

scientific article published on 04 January 2022

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