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List of works by Eduard J Kerkhoven

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

scientific article published on 08 August 2019

A domino effect in drug action: from metabolic assault towards parasite differentiation

scientific article published on 5 November 2010

Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

scientific article published on 21 December 2021

An atlas of human metabolism

scientific article published on 24 March 2020

Applications of computational modeling in metabolic engineering of yeast

article

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

scientific article published on 22 October 2020

C/N ratio and carbon source-dependent lipid production profiling in Rhodotorula toruloides

scientific article published on 24 January 2020

Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

scientific article published on 15 October 2021

Crystal structure of an arginase-like protein from Trypanosoma brucei that evolved without a binuclear manganese cluster

scientific article

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction

scientific article published on 16 June 2022

Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism ⬇️

scientific article published on January 19, 2012

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

scientific article published on 03 September 2020

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

scientific article published on 7 February 2023

Generation and analysis of context-specific genome-scale metabolic models derived from single-cell RNA-Seq data

scientific article published on 26 April 2022

Genome scale metabolic modeling of the riboflavin overproducer Ashbya gossypii

scientific article published on 27 December 2013

Genome-scale metabolic model of Pichia pastoris with native and humanized glycosylation of recombinant proteins

scientific article published on 19 October 2015

Genome-scale model of Rhodotorula toruloides metabolism

Genome-scale model of Rhodotorula toruloides metabolism

scientific article published on 22 September 2019

HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer

scientific article published on 19 March 2023

Handling uncertainty in dynamic models: the pentose phosphate pathway in Trypanosoma brucei

scientific article (publication date: 2013)

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

scientific article published on 27 May 2022

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints ⬇️

scientific article published on 03 August 2017

Investigating the Influence of Glycerol on the Utilization of Glucose in Yarrowia lipolytica Using RNA-Seq-Based Transcriptomics

scientific article published on 03 December 2019

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

scientific article

Probing the metabolic network in bloodstream-form Trypanosoma brucei using untargeted metabolomics with stable isotope labelled glucose

scientific article

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

RAVEN 2.0: a versatile toolbox for metabolic network reconstruction and a case study onStreptomyces coelicolor

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

scientific article published in 2022

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

scientific article published in April 2021

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

scientific article published on 5 March 2021

Regulation of amino-acid metabolism controls flux to lipid accumulation in Yarrowia lipolytica

scientific article

Resin acids play key roles in shaping microbial communities during degradation of spruce bark

scientific article published in 2023

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

The silicon trypanosome: a test case of iterative model extension in systems biology

scientific article published on January 2014

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei

scientific article

Trypanosoma brucei: meet the system

scientific article published on 16 July 2014

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