List of works - Newton Gomes

A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance

scholarly article by Maria Alexandrino et al published March 2011 in Journal of Hazardous Materials

A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities

article

An ecotoxicological analysis of the sediment quality in a European Atlantic harbor emphasizes the current limitations of the Water Framework Directive.

scientific article published on 7 May 2013

Antimicrobial photodynamic therapy: study of bacterial recovery viability and potential development of resistance after treatment.

scientific article published on 20 January 2010

Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems.

scientific article published on 9 August 2011

Assessing variation in bacterial composition between the rhizospheres of two mangrove tree species

article

Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing.

scientific article

Bacterial communities associated with the decomposition of Fucus vesiculosus in transitional waters

article

Bacterial communities from corals cultured ex situ remain stable under different light regimes — Relevance for in toto aquaculture

Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.

scientific article published on 26 February 2015

Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia

scientific article published on 10 March 2021

Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival, host specificity and effect on bacterial community structure

scientific article published on 7 November 2011

Biodegradation of 17β-estradiol by bacteria isolated from deep sea sediments in aerobic and anaerobic media.

scientific article published on 10 May 2016

Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole (Solea senegalensis) with Phage AS-A

article by Yolanda J. Silva et al published January 2016 in Aquaculture

Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level in cereal grains and coffee beans?

scientific article

Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification

scientific article published on 31 August 2020

Clavispora opuntiae and other yeasts associated with the moth Sigelgaita sp. in the cactus Pilosocereus arrabidae of Rio de Janeiro, Brazil

scientific article

Cnidarians as a source of new marine bioactive compounds--an overview of the last decade and future steps for bioprospecting

scientific article

Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment

scientific article

Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.

scientific article published on 14 June 2015

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes

scientific article published on 7 January 2015

Composition of Archaea in seawater, sediment, and sponges in the Kepulauan Seribu reef system, Indonesia.

scientific article published on 30 January 2014

Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia

article

Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation.

scientific article published on 2 December 2013

Contribution of reactive oxygen species to UV-B-induced damage in bacteria

article

Corrigendum to “Impact of organic and inorganic nanomaterials in the soil microbial community structure” [Sci Total Environ 424 (2012) 344–350]

article

Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples

scientific article

Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.

scientific article

Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples

article

Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm

article

Diversity in UV sensitivity and recovery potential among bacterioneuston and bacterioplankton isolates

scientific article published on 15 February 2011

Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics

scientific article

Effect of chemical stress and ultraviolet radiation in the bacterial communities of zebrafish embryos.

scientific article

Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabreamSparus aurata(Linnaeus, 1758)

article

Effects of Cd- and Zn-enriched sewage sludge on soil bacterial and fungal communities ⬇️

scientific article published on August 4, 2010

Effects of Monospecific Banks of Salt Marsh Vegetation on Sediment Bacterial Communities

scientific article published on 22 May 2010

Effects of UV-B radiation on the structural and physiological diversity of bacterioneuston and bacterioplankton.

scientific article

Effects of the Inoculant Strain Pseudomonas sp. SPN31 nah + and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides.

scientific article published on 4 March 2017

Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: insights from microcosm studies

article by Ana L. Santos et al published 19 August 2010 in Aquatic Sciences

Enhancement of gold-cyanide biosorption by L-cysteine

Erratum to: Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy

scholarly article published in Annals of Microbiology

Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy.

scientific article published on 23 February 2011

Evaluation of resistance development and viability recovery by a non-enveloped virus after repeated cycles of aPDT.

scientific article published on 21 June 2011

Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate

scientific article published on 15 March 2013

Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago

scientific article published on 14 August 2015

Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters.

scientific article

Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons.

scientific article

Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria

scientific article

Impact of organic and inorganic nanomaterials in the soil microbial community structure

scientific article

Influence of environmental variables in the efficiency of phage therapy in aquaculture

scientific article

Interactive effects of global climate change and pollution on marine microbes: the way ahead

scientific article (publication date: June 2013)

Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer

scientific article published on 01 March 2012

Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes

scientific article

Mechanisms of photodynamic inactivation of a gram-negative recombinant bioluminescent bacterium by cationic porphyrins.

scientific article

Microbe-assisted phytoremediation of hydrocarbons in estuarine environments

scientific article published on 08 July 2014

Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment

scientific article published on 20 May 2019

Molecular analysis of bacterial communities and detection of potential pathogens in a recirculating aquaculture system for Scophthalmus maximus and Solea senegalensis

scientific article

Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production.

scientific article published on May 2015

Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution

scientific article

Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins.

scientific article published on 11 May 2013

Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools

scientific article

Phage therapy and photodynamic therapy: low environmental impact approaches to inactivate microorganisms in fish farming plants.

scientific article published on 30 July 2009

Phage therapy as an approach to prevent Vibrio anguillarum infections in fish larvae production

scientific article

Phage therapy to control multidrug-resistant Pseudomonas aeruginosa skin infections: in vitro and ex vivo experiments

scientific article published on 10 July 2012

Photodynamic antimicrobial chemotherapy in aquaculture: photoinactivation studies of Vibrio fischeri.

scientific article

Photodynamic inactivation of Penicillium chrysogenum conidia by cationic porphyrins

scientific article published on 22 August 2011

Phthalocyanine thio-pyridinium derivatives as antibacterial photosensitizers.

scientific article

Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe-pollutant interactions in a remote environment

scientific article

Prokaryotes in salt marsh sediments of Ria de Aveiro: Effects of halophyte vegetation on abundance and diversity

scholarly article by Vanessa Oliveira et al published September 2012 in Estuarine, Coastal and Shelf Science

Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics

scientific article published on 19 July 2011

Rhizosphere communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differ less than those of different potato cultivars

scientific article

Role of Transition Metals in UV-B-Induced Damage to Bacteria

article by Ana L. Santos et al published 4 March 2013 in Photochemistry and Photobiology

Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass ( Dicentrarchus labrax ) aquaculture system

article

Selective cultures for the isolation of biosurfactant producing bacteria: comparison of different combinations of environmental inocula and hydrophobic carbon sources.

scientific article published in January 2013

Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems

scientific article published on 11 July 2017

Taking root: enduring effect of rhizosphere bacterial colonization in mangroves

scientific article

Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima

scientific article published on 7 April 2016

The UV responses of bacterioneuston and bacterioplankton isolates depend on the physiological condition and involve a metabolic shift

article

The impact of shrimp farming effluent on bacterial communities in mangrove waters, Ceará, Brazil.

scientific article

The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment.

scientific article

The sponge microbiome within the greater coral reef microbial metacommunity

scientific article published on 09 April 2019

Thiocyanate degradation by pure and mixed cultures of microorganisms

article

Ultracentrifugation as a direct method to concentrate viruses in environmental waters: virus-like particle enumeration as a new approach to determine the efficiency of recovery.

scientific article

Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.

scientific article

List of works by Newton Gomes

A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance

A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities

An ecotoxicological analysis of the sediment quality in a European Atlantic harbor emphasizes the current limitations of the Water Framework Directive.

Antimicrobial photodynamic therapy: study of bacterial recovery viability and potential development of resistance after treatment.

Applicability of photodynamic antimicrobial chemotherapy as an alternative to inactivate fish pathogenic bacteria in aquaculture systems.

Assessing variation in bacterial composition between the rhizospheres of two mangrove tree species

Assessment of variation in bacterial composition among microhabitats in a mangrove environment using DGGE fingerprints and barcoded pyrosequencing.

Bacterial communities associated with the decomposition of Fucus vesiculosus in transitional waters

Bacterial communities from corals cultured ex situ remain stable under different light regimes — Relevance for in toto aquaculture

Bacterial community composition and predicted functional ecology of sponges, sediment and seawater from the thousand islands reef complex, West Java, Indonesia.

Bacterial composition and putative functions associated with sponges, sediment and seawater from the Tioman coral reef system, Peninsular Malaysia

Bacteriophages with potential for inactivation of fish pathogenic bacteria: survival, host specificity and effect on bacterial community structure

Biodegradation of 17β-estradiol by bacteria isolated from deep sea sediments in aerobic and anaerobic media.

Biological control of Aeromonas salmonicida infection in juvenile Senegalese sole (Solea senegalensis) with Phage AS-A

Can volatile organic metabolites be used to simultaneously assess microbial and mite contamination level in cereal grains and coffee beans?

Characterization of putative circular plasmids in sponge-associated bacterial communities using a selective multiply-primed rolling circle amplification

Clavispora opuntiae and other yeasts associated with the moth Sigelgaita sp. in the cactus Pilosocereus arrabidae of Rio de Janeiro, Brazil

Cnidarians as a source of new marine bioactive compounds--an overview of the last decade and future steps for bioprospecting

Comparison of archaeal and bacterial communities in two sponge species and seawater from an Indonesian coral reef environment

Composition and Predictive Functional Analysis of Bacterial Communities in Seawater, Sediment and Sponges in the Spermonde Archipelago, Indonesia.

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes

Composition of Archaea in seawater, sediment, and sponges in the Kepulauan Seribu reef system, Indonesia.

Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia

Contribution of chemical water properties to the differential responses of bacterioneuston and bacterioplankton to ultraviolet-B radiation.

Contribution of reactive oxygen species to UV-B-induced damage in bacteria

Corrigendum to “Impact of organic and inorganic nanomaterials in the soil microbial community structure” [Sci Total Environ 424 (2012) 344–350]

Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples

Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities.

Development of a molecular methodology for fast detection of Photobacterium damselae subspecies in water samples

Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm

Diversity in UV sensitivity and recovery potential among bacterioneuston and bacterioplankton isolates

Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics

Effect of chemical stress and ultraviolet radiation in the bacterial communities of zebrafish embryos.

Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabreamSparus aurata(Linnaeus, 1758)

Effects of Cd- and Zn-enriched sewage sludge on soil bacterial and fungal communities ⬇️

Effects of Monospecific Banks of Salt Marsh Vegetation on Sediment Bacterial Communities

Effects of UV-B radiation on the structural and physiological diversity of bacterioneuston and bacterioplankton.

Effects of the Inoculant Strain Pseudomonas sp. SPN31 nah + and of 2-Methylnaphthalene Contamination on the Rhizosphere and Endosphere Bacterial Communities of Halimione portulacoides.

Effects of ultraviolet radiation on the abundance, diversity and activity of bacterioneuston and bacterioplankton: insights from microcosm studies

Enhancement of gold-cyanide biosorption by L-cysteine

Erratum to: Proportion of prokaryotes enumerated as viruses by epifluorescence microscopy

Evaluating seasonal dynamics of bacterial communities in marine fish aquaculture: a preliminary study before applying phage therapy.

Evaluation of resistance development and viability recovery by a non-enveloped virus after repeated cycles of aPDT.

Growth conditions influence UVB sensitivity and oxidative damage in an estuarine bacterial isolate

Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago

Habitat- and host-related variation in sponge bacterial symbiont communities in Indonesian waters.

Halophyte plant colonization as a driver of the composition of bacterial communities in salt marshes chronically exposed to oil hydrocarbons.

Hydrocarbon contamination and plant species determine the phylogenetic and functional diversity of endophytic degrading bacteria

Impact of organic and inorganic nanomaterials in the soil microbial community structure

Influence of environmental variables in the efficiency of phage therapy in aquaculture

Interactive effects of global climate change and pollution on marine microbes: the way ahead

Isolation of Surfactant-Resistant Pseudomonads from the Estuarine Surface Microlayer

Jellyfish-associated bacterial communities and bacterioplankton in Indonesian Marine lakes

Mechanisms of photodynamic inactivation of a gram-negative recombinant bioluminescent bacterium by cationic porphyrins.

Microbe-assisted phytoremediation of hydrocarbons in estuarine environments

Microcosm evaluation of the impact of oil contamination and chemical dispersant addition on bacterial communities and sediment remediation of an estuarine port environment

Molecular analysis of bacterial communities and detection of potential pathogens in a recirculating aquaculture system for Scophthalmus maximus and Solea senegalensis

Molecular analysis of skin bacterial assemblages from codfish and pollock after dry-salted fish production.

Multitaxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution

Nucleic acid changes during photodynamic inactivation of bacteria by cationic porphyrins.

Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools

Phage therapy and photodynamic therapy: low environmental impact approaches to inactivate microorganisms in fish farming plants.

Phage therapy as an approach to prevent Vibrio anguillarum infections in fish larvae production

Phage therapy to control multidrug-resistant Pseudomonas aeruginosa skin infections: in vitro and ex vivo experiments

Photodynamic antimicrobial chemotherapy in aquaculture: photoinactivation studies of Vibrio fischeri.

Photodynamic inactivation of Penicillium chrysogenum conidia by cationic porphyrins

Phthalocyanine thio-pyridinium derivatives as antibacterial photosensitizers.

Polycyclic aromatic hydrocarbons in deep sea sediments: Microbe-pollutant interactions in a remote environment

Prokaryotes in salt marsh sediments of Ria de Aveiro: Effects of halophyte vegetation on abundance and diversity

Relation between bacterial activity in the surface microlayer and estuarine hydrodynamics

Rhizosphere communities of genetically modified zeaxanthin-accumulating potato plants and their parent cultivar differ less than those of different potato cultivars

Role of Transition Metals in UV-B-Induced Damage to Bacteria

Seasonal patterns of bacterioplankton composition in a semi-intensive European seabass ( Dicentrarchus labrax ) aquaculture system

Selective cultures for the isolation of biosurfactant producing bacteria: comparison of different combinations of environmental inocula and hydrophobic carbon sources.

Sponge Prokaryote Communities in Taiwanese Coral Reef and Shallow Hydrothermal Vent Ecosystems

Taking root: enduring effect of rhizosphere bacterial colonization in mangroves

Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima

The UV responses of bacterioneuston and bacterioplankton isolates depend on the physiological condition and involve a metabolic shift

The impact of shrimp farming effluent on bacterial communities in mangrove waters, Ceará, Brazil.