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List of works by Jerven Bolleman

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications ⬇️

scientific article published on 8 October 2024

Annotation of biologically relevant ligands in UniProtKB using ChEBI

scientific article published on 9 December 2022

BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data

scientific article (publication date: 2014)

BioHack24 report: Using discovered RDF schemes: a compilation of potential use cases for shapes reusage

BioHackJP 2023 Report R4: integration of glyco data with chemo-, geno-, lipid-omics and pathway data

BioHackathon 2015: Semantics of data for life sciences and reproducible research

scientific article published on 24 February 2020

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

scientific article (publication date: 5 February 2014)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services

scientific article

Catching Inconsistencies with the Semantic Web: A Biocuration Case Study ⬇️

Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB

scientific article published in 2021

Enzyme annotation in UniProtKB using Rhea

scientific article published on 01 March 2020

FAIR adoption, assessment and challenges at UniProt

scientific article published on 20 September 2019

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

scientific article published on 13 June 2016

Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation

scientific article published on 24 June 2014

HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes

scientific article published on 01 February 2020

Interoperability and FAIRness through a novel combination of Web technologies ⬇️

scientific article (publication date: 24 April 2017)

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Interoperability and FAIRness through a novel combination of Web technologies

Introducing glycomics data into the Semantic Web.

scientific article

Ongoing and future developments at the Universal Protein Resource

scientific article

Perspectives on tracking data reuse across biodata resources

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search

scientific article

Reorganizing the protein space at the Universal Protein Resource (UniProt)

scientific article (publication date: 2012)

SPARQL-enabled identifier conversion with Identifiers.org

scientific article

SemanticGenomeGraphs ⬇️

SwissBioPics—an interactive library of cell images for the visualization of subcellular location data

scientific article published in January 2022

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

scientific article (publication date: 11 February 2013)

The EBI RDF platform: linked open data for the life sciences

scientific article

The SIB Swiss Institute of Bioinformatics Semantic Web of data

scientific article published on 25 October 2023

The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases

scientific article (publication date: 4 January 2016)

The health care and life sciences community profile for dataset descriptions

scientific article (publication date: 2016)

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

The health care and life sciences community profile for dataset descriptions

article published in 2016

UniProt: the Universal Protein Knowledgebase in 2023

scientific article published on 21 November 2022

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

scientific article published on 12 May 2020

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

scientific article published in December 2020

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