List of works by Edoardo Saccenti

A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes

scientific article published in 2022

A metabolomic perspective on coeliac disease.

scientific article published on 09 February 2014

Age and Sex Effects on Plasma Metabolite Association Networks in Healthy Subjects

scientific article published in November 2017

Allostasis and Resilience of the Human Individual Metabolic Phenotype.

scientific article

Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections

scientific article published on 04 May 2022

Approaches to Sample Size Determination for Multivariate Data: Applications to PCA and PLS-DA of Omics Data.

scientific article

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

scientific article published on 14 September 2015

Association between Psychosocial Stress and Fecal Microbiota in Pregnant Women

scholarly article by C Hechler et al published 14 March 2019 in Scientific Reports

Cancers in Agreement? Exploring the Cross-Talk of Cancer Metabolomic and Transcriptomic Landscapes Using Publicly Available Data

scientific article published on 21 January 2021

Comparative transcriptomics reveal developmental turning points during embryogenesis of a hemimetabolous insect, the damselfly Ischnura elegans.

scientific article published on 19 October 2017

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

scientific article (publication date: 6 December 2016)

Comparison of dimensionality assessment methods in Principal Component Analysis based on permutation tests

scholarly article by Raffaele Vitale & Edoardo Saccenti published October 2018 in Chemometrics and Intelligent Laboratory Systems

Considering Horn's Parallel Analysis from a Random Matrix Theory Point of View

scientific article published on 13 October 2016

Consistency, Inconsistency and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome Scale Metabolic Modelling

scientific article published on 27 December 2018

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

scientific article published on 06 February 2019

Correlation Patterns in Experimental Data Are Affected by Normalization Procedures: Consequences for Data Analysis and Network Inference

scientific article

Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models

scientific article published on 16 January 2020

Diabetes and necrotizing soft tissue infections-A prospective observational cohort study: Statistical analysis plan.

scientific article published on 19 April 2018

Differential Network Analysis Reveals Metabolic Determinants Associated with Mortality in Acute Myocardial Infarction Patients and Suggests Potential Mechanisms Underlying Different Clinical Scores Used To Predict Death

scientific article published on 17 January 2020

Differential Network Analysis Reveals Molecular Determinants Associated with Blood Pressure and Heart Rate in Healthy Subjects

scientific article published on 04 December 2020

Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen

scientific article

Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics.

scientific article published on 23 October 2015

Entropy-Based Network Representation of the Individual Metabolic Phenotype

scientific article published on 01 August 2016

Evaluation of Single Sample Network Inference Methods for Metabolomics-Based Systems Medicine

scientific article published on 02 December 2020

Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

scientific article published on 15 September 2016

Group-Wise Principal Component Analysis for Exploratory Data Analysis

article

Group-wise ANOVA simultaneous component analysis for designed omics experiments.

scientific article published on 21 May 2018

Group-wise partial least square regression

scholarly article by José Camacho Páez & Edoardo Saccenti published 1 December 2017 in Journal of Chemometrics

Hypothesis: the sound of the individual metabolic phenotype? Acoustic detection of NMR experiments

scientific article

Identification of a serum-detectable metabolomic fingerprint potentially correlated with the presence of micrometastatic disease in early breast cancer patients at varying risks of disease relapse by traditional prognostic methods

scientific article published on 03 January 2011

Impact of a wastewater treatment plant on microbial community composition and function in a hyporheic zone of a eutrophic river

scientific article published on 26 November 2015

Integrated Univariate, Multivariate, and Correlation-Based Network Analyses Reveal Metabolite-Specific Effects on Bacterial Growth and Biofilm Formation in Necrotizing Soft Tissue Infections

scientific article published on 14 January 2020

Microbial Community Response of an Organohalide Respiring Enrichment Culture to Permanganate Oxidation

scientific article

Milk Metabolomics Data Reveal the Energy Balance of Individual Dairy Cows in Early Lactation

scientific article published in Scientific Reports

NMR Spectroscopy for Metabolomics Research

scientific article published on 27 June 2019

Necrotizing soft tissue infections - a multicentre, prospective observational study (INFECT): protocol and statistical analysis plan.

scientific article published on 29 October 2017

Of monkeys and men: a metabolomic analysis of static and dynamic urinary metabolic phenotypes in two species

scientific article

On the Use of Correlation and MI as a Measure of Metabolite-Metabolite Association for Network Differential Connectivity Analysis

scientific article published on 24 April 2020

Patient's characteristics and outcomes in necrotising soft-tissue infections: results from a Scandinavian, multicentre, prospective cohort study

scientific article published on 22 August 2019

Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling

scientific article published on 18 May 2017

Probabilistic Networks of Blood Metabolites in Healthy Subjects As Indicators of Latent Cardiovascular Risk

scientific article published on 08 December 2014

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

scientific article published on 15 August 2016

Read all about it!? Public accountability, fragmented global climate governance and the media

scholarly article by Sylvia I. Karlsson-Vinkhuyzen et al published 17 August 2016 in Climate Policy

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

scientific article published on 23 November 2017

Simplivariate models: uncovering the underlying biology in functional genomics data

scientific article

Simulation and Reconstruction of Metabolite-Metabolite Association Networks Using a Metabolic Dynamic Model and Correlation Based Algorithms

scientific article published on 04 February 2019

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows

scientific article published on 31 January 2018

The association between breastmilk oligosaccharides and faecal microbiota in healthy breastfed infants at two, six, and twelve weeks of age

scientific article published on 06 March 2020

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

scientific article published on 28 July 2017

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