List of works by Melanie Schirmer

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

scientific article published on 14 January 2016

Age-of-diagnosis dependent ileal immune intensification and reduced alpha-defensin in older versus younger pediatric Crohn Disease patients despite already established dysbiosis

scientific article published in March 2019

Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes

scientific article published on 19 December 2012

Binning metagenomic contigs by coverage and composition

scientific article

Clinical and biological predictors of response to standardised paediatric colitis therapy (PROTECT): a multicentre inception cohort study

scientific article published on 29 March 2019

Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course

article

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

scientific article

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

scientific article

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

scientific article published on 13 January 2015

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity ⬇️

scientific article

Metagenomic Sequencing Unravels Gene Fragments with Phylogenetic Signatures of O2-Tolerant NiFe Membrane-Bound Hydrogenases in Lacustrine Sediment

scientific article published on 5 June 2015

Microbial genes and pathways in inflammatory bowel disease

scientific article published on 01 August 2019

PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes

scientific article

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

scientific article

Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study

scientific article published on March 2017

Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications

scientific article published in 2023

Species-level functional profiling of metagenomes and metatranscriptomes

scholarly article by Eric A Franzosa published in October 2018

Stable-isotope probing and metagenomics reveal predation by protozoa drives E. coli removal in slow sand filters.

scientific article published on 17 March 2015

The causes and consequences of variation in human cytokine production in health

article

The effect of host genetics on the gut microbiome

scientific article published on 03 October 2016

The kinase DYRK1A reciprocally regulates the differentiation of Th17 and regulatory T cells

scientific article published on 22 May 2015

Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response

scientific article published in Nature Communications

Understanding human immune function using the resources from the Human Functional Genomics Project

scientific article published on August 2016

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