List of works - Manor Askenazi

A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics.

scientific article

A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes ⬇️

scientific article published on September 15, 2010

A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.

scientific article

ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry ⬇️

scientific article published on May 27, 2011

Affinity purification mass spectrometry analysis of PD-1 uncovers SAP as a new checkpoint inhibitor

scientific article

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

scientific article

ClanTox: a classifier of short animal toxins

scientific article

Cluster analysis and data visualization of large-scale gene expression data ⬇️

scientific article published on January 1, 1998

DNA Ends Alter the Molecular Composition and Localization of Ku Multicomponent Complexes ⬇️

scientific article published on April 24, 2012

Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers

scientific article published on 04 November 2011

Genome Sequence of the Plant Pathogen and Biotechnology Agent Agrobacterium tumefaciens C58

scientific article

Implicit Biology in Peptide Spectral Libraries ⬇️

scientific article published on August 31, 2012

Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains.

scientific article published on 21 January 2003

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

scientific journal article

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

scientific article

Nrf2 Activation Promotes Lung Cancer Metastasis by Inhibiting the Degradation of Bach1

scientific article published on 27 June 2019

OpenSlice: Quantitative data sharing from HyperPeaks to global ion chromatograms (GICs).

scientific article

PGx: Putting Peptides to BED

scientific article published on 7 December 2015

Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data

scientific article published in May 2010

Protected amine labels: a versatile molecular scaffold for multiplexed nominal mass and sub-Da isotopologue quantitative proteomic reagents.

scientific article published on 05 February 2014

Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters.

scientific article

Proteomic differences in amyloid plaques in rapidly progressive and sporadic Alzheimer's disease

scientific article

Quantitative assessment of whole-body tumor burden in adult patients with neurofibromatosis

scientific article

Short toxin-like proteins abound in Cnidaria genomes

scientific article

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5.

scientific article

The complete peptide dictionary – A meta‐proteomics resource ⬇️

scientific article published on December 1, 2010

The purine biosynthesis regulator PurR moonlights as a virulence regulator in Staphylococcus aureus

scientific article published on 19 June 2019

Using Quantitative Spectrometry to Understand the Influence of Genetics and Nutritional Perturbations On the Virulence Potential of Staphylococcus aureus

scientific article published on 14 February 2017

Visualizing the agreement of peptide assignments between different search engines

scientific article published on 12 November 2019

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

multiplierz: an extensible API based desktop environment for proteomics data analysis.

scientific article

mzAPI: a new strategy for efficiently sharing mass spectrometry data

scientific article

mzResults: an interactive viewer for interrogation and distribution of proteomics results.

scientific article

mzServer: Web-based Programmatic Access for Mass Spectrometry Data Analysis ⬇️

scientific article published on January 25, 2011

List of works by Manor Askenazi

A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics.

A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes ⬇️

A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.

ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry ⬇️

Affinity purification mass spectrometry analysis of PD-1 uncovers SAP as a new checkpoint inhibitor

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer.

ClanTox: a classifier of short animal toxins

Cluster analysis and data visualization of large-scale gene expression data ⬇️

DNA Ends Alter the Molecular Composition and Localization of Ku Multicomponent Complexes ⬇️

Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers

Genome Sequence of the Plant Pathogen and Biotechnology Agent Agrobacterium tumefaciens C58

Implicit Biology in Peptide Spectral Libraries ⬇️

Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains.

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

Nrf2 Activation Promotes Lung Cancer Metastasis by Inhibiting the Degradation of Bach1

OpenSlice: Quantitative data sharing from HyperPeaks to global ion chromatograms (GICs).

PGx: Putting Peptides to BED

Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data

Protected amine labels: a versatile molecular scaffold for multiplexed nominal mass and sub-Da isotopologue quantitative proteomic reagents.

Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters.

Proteomic differences in amyloid plaques in rapidly progressive and sporadic Alzheimer's disease

Quantitative assessment of whole-body tumor burden in adult patients with neurofibromatosis

Short toxin-like proteins abound in Cnidaria genomes

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5.

The complete peptide dictionary – A meta‐proteomics resource ⬇️

The purine biosynthesis regulator PurR moonlights as a virulence regulator in Staphylococcus aureus

Using Quantitative Spectrometry to Understand the Influence of Genetics and Nutritional Perturbations On the Virulence Potential of Staphylococcus aureus

Visualizing the agreement of peptide assignments between different search engines

iPRG 2011: A Study on the Identification of Electron Transfer Dissociation (ETD) Mass Spectra

multiplierz: an extensible API based desktop environment for proteomics data analysis.

mzAPI: a new strategy for efficiently sharing mass spectrometry data

mzResults: an interactive viewer for interrogation and distribution of proteomics results.

mzServer: Web-based Programmatic Access for Mass Spectrometry Data Analysis ⬇️