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List of works by John W.A. Rossen

814A Prospective Analysis of the Clinical Spectrum of Different Subtypes Human Enterovirus and Human Parechovirus.

scientific article published in December 2014

A murine and a porcine coronavirus are released from opposite surfaces of the same epithelial cells.

scientific article published on October 1996

A novel Tn1696-like composite transposon (Tn6404) harboring bla IMP-4 in a Klebsiella pneumoniae isolate carrying a rare ESBL gene bla SFO-1.

scientific article published on 11 December 2017

A systemic neutrophil response precedes robust CD8(+) T-cell activation during natural respiratory syncytial virus infection in infants.

scientific article

Absence of human metapneumovirus co-infection in cases of severe respiratory syncytial virus infection.

scientific article published in September 2006

After the bite: bacterial transmission from grey seals (Halichoerus grypus) to harbour porpoises (Phocoena phocoena)

scientific article published on 13 May 2020

An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae

article

An outbreak of colistin-resistant Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae in the Netherlands (July to December 2013), with inter-institutional spread

scientific article published on 12 June 2015

Antibiotic Resistance and Molecular Characterization of Cronobacter sakazakii Strains Isolated from Powdered Infant Formula Milk

scientific article published in 2022

Antibiotic resistance plasmids cointegrated into a megaplasmid harbouring the blaOXA-427 carbapenemase gene

scientific article published on 8 January 2018

Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Isolated from Cattle, Pigs, Food and Farm Environment

scientific article published on 28 September 2018

Application of next generation sequencing in clinical microbiology and infection prevention

scientific article

ArgO145, a Stx2a prophage of a bovine O145:H- STEC strain, is closely related to phages of virulent human strains.

scientific article

Assessing the public health risk of Shiga toxin-producing Escherichia coli by use of a rapid diagnostic screening algorithm

scientific article

Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples

scientific article published on 27 November 2020

Association between rectal colonization with Highly Resistant Gram-negative Rods (HR-GNRs) and subsequent infection with HR-GNRs in clinical patients: A one year historical cohort study

scientific article published in PLoS ONE

Associations between pathogens in the upper respiratory tract of young children: interplay between viruses and bacteria

scientific article

Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

scholarly article published in Scientific Reports

Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

scientific article published on 6 April 2018

Centre-specific bacterial pathogen typing affects infection-control decision making

scientific article published on 01 August 2021

Changes in oral microflora after full-mouth tooth extraction: a prospective cohort study.

scientific article

Characteristics of pediatric patients with enterovirus meningitis and no cerebral fluid pleocytosis ⬇️

scientific article published on November 22, 2011

Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427).

scientific article

Characterization of fosfomycin heteroresistance among MDR Escherichia coli isolates from hospitalized patients in Rio de Janeiro, Brazil

scientific article published on 07 May 2020

Characterization of the population structure, drug resistance mechanisms and plasmids of the community-associated Enterobacter cloacae complex in China.

scientific article published on 27 October 2017

Clinical epidemiology of bocavirus, rhinovirus, two polyomaviruses and four coronaviruses in HIV-infected and HIV-uninfected South African children

scientific article published on 03 February 2014

Clinical sensitivity and specificity of the Check-Points Check-Direct ESBL Screen for BD MAX, a real-time PCR for direct ESBL detection from rectal swabs.

scientific article published on 19 June 2017

Commonality of Multidrug-Resistant Klebsiella pneumoniae ST348 Isolates in Horses and Humans in Portugal

scientific article published on 18 July 2019

Comparative genomics reveals a lack of evidence for pigeons as a main source of stx-carrying Escherichia coli causing disease in humans and the common existence of hybrid Shiga toxin-producing and enteropathogenic E. coli pathotypes

scientific article published on 05 April 2019

Comparison of 14 molecular assays for detection of Mycobacterium tuberculosis complex in bronchoalveolar lavage fluid.

scientific article published on 21 August 2013

Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics.

scientific article

Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics

scientific article published on 5 April 2018

Comprehensive Characterization of Escherichia coli O104:H4 Isolated from Patients in the Netherlands.

scientific article

Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil.

scientific article

Conserved Citrullinating Exoenzymes in Porphyromonas Species

scientific article published in December 2017

Contribution of AcrAB-TolC to multidrug resistance in an Escherichia coli sequence type 131 isolate.

scientific article published on 6 July 2017

Coronaviruses in polarized epithelial cells.

scientific article published on January 1995

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

scientific article published in Scientific Reports

Cross-border comparison of the Dutch and German guidelines on multidrug-resistant Gram-negative microorganisms

scientific article

Cyclooxygenase activity is important for efficient replication of mouse hepatitis virus at an early stage of infection.

scientific article

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing

scientific article published on 01 March 2020

Decreasing prevalence of contamination with extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-E) in retail chicken meat in the Netherlands

scientific article published on 31 December 2019

Description of Citrobacter cronae sp. nov., isolated from human rectal swabs and stool samples

scientific article published on 24 April 2020

Detection of Bartonella spp. DNA in Clinical Specimens Using an Internally Controlled Real-Time PCR Assay

scientific article published on 01 January 2013

Detection of Giardia lamblia, Cryptosporidium spp. and Entamoeba histolytica in clinical stool samples by using multiplex real-time PCR after automated DNA isolation.

scientific article

Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing

scientific article published on 01 December 2019

Detection of an In104-like integron carrying a blaIMP-34 gene in Enterobacter cloacae isolates co-producing IMP-34 and VIM-1

scientific article published on 01 September 2019

Detection of enterovirus RNA in cerebrospinal fluid: Comparison of two molecular assays

scientific article published on 15 October 2011

Detection of in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing

scientific article published on 18 July 2018

Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages

scientific article published on 06 November 2019

Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches

scientific article

Diagnostic value of respiratory virus detection in symptomatic children using real-time PCR.

scientific article

Diarrhea, Urosepsis and Hemolytic Uremic Syndrome Caused by the Same Heteropathogenic Escherichia coli Strain.

scientific article

Disease severity and viral load are correlated in infants with primary respiratory syncytial virus infection in the community.

scientific article

Dynamics of human respiratory virus-specific CD8+ T cell responses in blood and airways during episodes of common cold.

scientific article published in October 2008

Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients

scientific article published on 7 July 2015

ESCMID postgraduate education course: applications of MALDI-TOF mass spectrometry in clinical microbiology

scientific article published on 30 June 2017

ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab

scientific article published on 17 March 2018

Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements

scientific article published on 01 December 2018

Emergence of a novel Enterobacter kobei clone carrying chromosomal-encoded CTX-M-12 with diversified pathogenicity in northeast China

scientific article published on 24 January 2017

Enterovirus and parechovirus infection in children: a brief overview

scientific article

Entry and release of transmissible gastroenteritis coronavirus are restricted to apical surfaces of polarized epithelial cells.

scientific article published on December 1994

Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing

scientific article published on 28 March 2019

Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study

scientific article published on 06 June 2019

Epidemiology of Extended-Spectrum β-Lactamase-Producing E. coli and Vancomycin-Resistant Enterococci in the Northern Dutch-German Cross-Border Region.

scientific article published on 5 October 2017

Epidemiology of Staphylococcus aureus in a burn unit of a tertiary care center in Ghana

research work

Evaluation of Patients with Community-Acquired Pneumonia Caused by Zoonotic Pathogens in an Area with a High Density of Animal Farms

scientific article published on 27 July 2015

Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli

article

Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis

scientific article published on 11 January 2018

Evaluation of yield of currently available diagnostics by sample type to optimize detection of respiratory pathogens in patients with a community-acquired pneumonia

scientific article

Expansion of KPC-producing klebsiella pneumoniae with various mgrB-mutations giving rise to colistin-resistance: the role of ISL3 on plasmids

scientific article published on 27 October 2017

Expression of functional growth hormone receptor in a mouse L cell line infected with recombinant vaccinia virus.

scientific article published on April 1994

Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands

scientific article published in PLoS ONE

Feline and canine coronaviruses are released from the basolateral side of polarized epithelial LLC-PK1 cells expressing the recombinant feline aminopeptidase-N cDNA

scientific article published on 01 January 2001

First report of OXA-48-producing Escherichia coli in Croatia and confirmed intergenic transfer of a plasmid-carrying blaOXA-48 from Klebsiella pneumoniae

scientific article published on 26 October 2017

First report of invasive liver abscess syndrome with endophthalmitis caused by a K2 serotype ST2398 hypervirulent Klebsiella pneumoniae in Germany, 2016. ⬇️

scientific article published on 3 March 2017

Fosfomycin Etest for Enterobacteriaceae: Interobserver and interlaboratory agreement

scientific article published on 27 June 2018

Genetic Diversity of Staphylococcus aureus in Buruli Ulcer

scientific article

Genetic characterization of Shiga toxin-producing Escherichia coli O26:H11 strains isolated from animal, food, and clinical samples.

scientific article published on 20 October 2015

Genetic loci of Staphylococcus aureus associated with anti-neutrophil cytoplasmic autoantibody (ANCA)-associated vasculitides

scientific article published on 22 September 2017

Genomic organization and expression of the 3' end of the canine and feline enteric coronaviruses

scientific article published on 01 January 1993

Genotypic diversity of Coxiella burnetii in the 2007-2010 Q fever outbreak episodes in The Netherlands

scientific article published on 21 December 2011

High Interlaboratory Reproducibility and Accuracy of Next-Generation-Sequencing-Based Bacterial Genotyping in a Ring Trial

scientific article

Human bocavirus and KI/WU polyomaviruses in pediatric intensive care patients.

scientific article published on March 2009

Human polyomavirus KI and WU in adults with community acquired pneumonia in The Netherlands, 2008–2009

scientific article published on 01 December 2010

Human rhinovirus and wheezing: short and long-term associations in children.

scientific article

Identification by genotyping of a commercial antigen preparation as the source of a laboratory contamination with Coxiella burnetii and as an unexpected rich source of control DNA.

scientific article published on 27 October 2010

Identification of a KPC-9-producing Klebsiella pneumoniae ST258 cluster among KPC-2-producing isolates of an ongoing outbreak in Northwestern Greece: a retrospective study.

scientific article published on 20 December 2017

Identification of a novel genomic island associated with vanD-type vancomycin-resistance in six Dutch vancomycin-resistant Enterococcus faecium.

scientific article published on 8 January 2018

Immunogenicity, boostability, and sustainability of the immune response after vaccination against Influenza A virus (H1N1) 2009 in a healthy population

scientific article

Impact of PCR for respiratory viruses on antibiotic use: theory and practice.

scientific article

Incidence, clinical implications and impact on public health of infections with Shigella spp. and entero-invasive Escherichia coli (EIEC): results of a multicenter cross-sectional study in the Netherlands during 2016-2017

scientific article published on 09 December 2019

Increased detection of respiratory syncytial virus, influenza viruses, parainfluenza viruses, and adenoviruses with real-time PCR in samples from patients with respiratory symptoms.

scientific article published on 16 May 2007

Increased risk of pneumonia in residents living near poultry farms: does the upper respiratory tract microbiota play a role?

scientific article published on 25 February 2017

Innovative and rapid antimicrobial susceptibility testing systems

scientific article published on 13 February 2020

Integrated Stewardship Model Comprising Antimicrobial, Infection Prevention, and Diagnostic Stewardship (AID Stewardship).

scientific article published in November 2017

Interaction of mouse hepatitis virus (MHV) spike glycoprotein with receptor glycoprotein MHVR is required for infection with an MHV strain that expresses the hemagglutinin-esterase glycoprotein

scientific article published in February 1995

Interlaboratory evaluation of different extraction and real-time PCR methods for detection of Coxiella burnetii DNA in serum.

scientific article

Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing.

scientific article

Isolation of an NDM-5-producing ST16 Klebsiella pneumoniae from a Dutch patient without travel history abroad, August 2015.

scientific article published on October 2015

Laboratory-based surveillance in the molecular era: the TYPENED model, a joint data-sharing platform for clinical and public health laboratories.

scientific article

Latent introduction to the Netherlands of multiple antibiotic resistance including NDM-1 after hospitalisation in Egypt, August 2013.

scientific article

Low anti-staphylococcal IgG responses in granulomatosis with polyangiitis patients despite long-term Staphylococcus aureus exposure

scientific article

MALDI-TOF MS Using a Custom-Made Database, Biomarker Assignment, or Mathematical Classifiers Does Not Differentiate Shigella spp. and Escherichia coli

scientific article published in 2022

MRSA Prevalence and Associated Risk Factors among Health-Care Workers in Non-outbreak Situations in the Dutch-German EUREGIO.

scientific article published on 22 August 2016

Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings.

scientific article

Molecular Characterization of Staphylococcus aureus Isolates Transmitted between Patients with Buruli Ulcer

scientific article published on 11 September 2015

Molecular Typing of Enterobacteriaceae from Pig Holdings in North-Western Germany Reveals Extended- Spectrum and AmpC β-Lactamases Producing but no Carbapenem Resistant Ones.

scientific article published on 30 July 2015

Molecular epidemiology of meticillin-resistant Staphylococcus aureus (MRSA): think regionally but use globally uniform typing languages

scientific article published on 24 October 2013

Multicenter evaluation of molecular and culture-dependent diagnostics for Shigella species and Entero-invasive Escherichia coli in the Netherlands.

scientific article

No nosocomial transmission under standard hygiene precautions in short term contact patients in case of an unexpected ESBL or Q&A E. coli positive patient: a one-year prospective cohort study within three regional hospitals

scientific article

Norovirus disease associated with excess mortality and use of statins: a retrospective cohort study of an outbreak following a pilgrimage to Lourdes.

scientific article published on 24 May 2010

Nucleocapsid-independent assembly of coronavirus-like particles by co-expression of viral envelope protein genes.

scientific article published in April 1996

OXY-2-15, a novel variant showing increased ceftazidime hydrolytic activity.

scientific article published on 27 January 2015

Performance of cobas® 4800 and m2000 real-time™ assays for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in rectal and self-collected vaginal specimen

scientific article published on 23 July 2013

Polymicrobial infections: ecosystems with special properties

scientific article published in January 2018

Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology

scientific article

Preparing the outbreak assistance laboratory network in the Netherlands for the detection of the influenza virus A(H1N1) variant.

scientific article

Presence of mcr-1-positive Enterobacteriaceae in retail chicken meat but not in humans in the Netherlands since 2009.

scientific article published on March 2016

Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates

article

Prevalence, risk factors and molecular epidemiology of highly resistant gram negative rods in hospitalized patients in the Dutch region Kennemerland.

scientific article published on 8 March 2016

Proof of an Outer Membrane Target of the Efflux Inhibitor Phe-Arg-β-Naphthylamide from Random Mutagenesis

Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands

article published in 2019

Prospective assessment of clinical symptoms associated with enterovirus and parechovirus genotypes in a multicenter study in Dutch children.

scientific article

Prospective comparison of the detection rates of human enterovirus and parechovirus RT-qPCR and viral culture in different pediatric specimens.

scientific article published on 21 August 2013

Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery.

scientific article published on 19 September 2017

Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae

scientific article published on 06 November 2019

Reduction of the nosocomial meticillin-resistant Staphylococcus aureus incidence density by a region-wide search and follow-strategy in forty German hospitals of the EUREGIO, 2009 to 2011.

scientific article published on 5 September 2013

Reprint of "Application of next generation sequencing in clinical microbiology and infection prevention".

scientific article

Retrospective identification of a previously undetected clinical case of OXA-48-producing K. pneumoniae and E. coli: the importance of adequate detection guidelines

scientific article published on 11 June 2015

Revealing the Virulence Potential of Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing

scientific article published on 04 September 2019

September through October 2010 multi-centre study in the Netherlands examining laboratory ability to detect enterovirus 68, an emerging respiratory pathogen

scientific article published on March 2013

Silent transmission of an IS1294b-deactivated mcr-1 gene with inducible colistin resistance

scientific article published on 12 January 2018

Sonication of heart valves detects more bacteria in infective endocarditis

scientific article published in Scientific Reports

Sputum microbiome profiling in COPD: beyond singular pathogen detection

scientific article published on 29 January 2020

Strengthening the diagnostic capacity to detect Bio Safety Level 3 organisms in unusual respiratory viral outbreaks

scientific article

Strong Association between Respiratory Viral Infection Early after Hematopoietic Stem Cell Transplantation and the Development of Life-Threatening Acute and Chronic Alloimmune Lung Syndromes

article

Structural characterisation of Toll-like receptor 1 (TLR1) and Toll-like receptor 6 (TLR6) in elephant and harbor seals

scientific article

Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit

scientific article published on 14 February 2020

Targeted next-generation sequencing of the 16S-23S rRNA region for culture-independent bacterial identification - increased discrimination of closely related species

scientific article published on 13 June 2017

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies

The dominance of human coronavirus OC43 and NL63 infections in infants

article

The efficacy of home telemonitoring versus conventional follow-up: a randomised controlled trial among teenagers with inflammatory bowel disease.

scientific article

The mosaic genome structure and phylogeny of Shiga toxin-producing Escherichia coli O104:H4 is driven by short-term adaptation.

scientific article published on 27 December 2014

The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia

scientific article published on 27 April 2020

The tongue microbiome in healthy subjects and patients with intra-oral halitosis.

scientific article published on 6 September 2017

The value of signs and symptoms in differentiating between bacterial, viral and mixed aetiology in patients with community-acquired pneumonia.

scientific article published on 16 December 2013

The viral spike protein is not involved in the polarized sorting of coronaviruses in epithelial cells.

scientific article published on January 1998

There's no place like OM: Vesicular sorting and secretion of the peptidylarginine deiminase of Porphyromonas gingivalis.

scientific article published in January 2018

Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter

article

Transmission of respiratory syncytial virus at the paediatric intensive-care unit: a prospective study using real-time PCR.

scientific article published on 11 June 2009

Typing and Species Identification of Clinical Klebsiella Isolates by Fourier Transform Infrared Spectroscopy and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

scientific article published on 25 October 2018

Unusual severe case of hemolytic uremic syndrome due to Shiga toxin 2d-producing E. coli O80:H2.

scientific article published on 25 March 2017

Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae.

scientific article

Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis

scientific article (publication date: 28 February 2011)

Viral and bacterial aetiology of community-acquired pneumonia in adults.

scientific article

Virulence Factors of Enteric Pathogenic Escherichia coli: A Review

scientific article published in 2021

Virulence potential of Staphylococcus aureus isolates from Buruli ulcer patients

scientific article published on 19 April 2017

Virulence, Antimicrobial Resistance Properties and Phylogenetic Background of Non-H7 Enteropathogenic Escherichia coli O157.

scientific article published on 28 September 2016

Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates

scientific article published on 13 April 2020

Whole-Genome Multilocus Sequence Typing of Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae

scientific article published on 14 September 2016

Whole-Genome Sequences of Two NDM-1-Producing Pseudomonas aeruginosa Strains Isolated in a Clinical Setting in Albania in 2018

scientific article published on 02 January 2020

Whole-genome characterization and genotyping of global WU polyomavirus strains

scientific article published on 31 March 2010

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