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List of works by Sébastien Carrere

A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale

scientific article published on 10 July 2018

A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments

scientific article

A receptor-like kinase enhances sunflower resistance to Orobanche cumana

scientific article published on 09 December 2019

ALOMYbase, a resource to investigate non-target-site-based resistance to herbicides inhibiting acetolactate-synthase (ALS) in the major grass weed Alopecurus myosuroides (black-grass).

scientific article published on 12 August 2015

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

scientific article

Author Correction: Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

scientific article published on 01 January 2018

Combined genetic and transcriptomic analysis reveals three major signalling pathways activated by Myc-LCOs in Medicago truncatula

scientific article published on 28 April 2015

Comparison of GWAS models to identify non-additive genetic control of flowering time in sunflower hybrids

scientific article published on 2 November 2017

Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

scientific article published on 31 July 2014

Draft Genome Sequence of Xanthomonas sacchari Strain LMG 476.

scientific article

Draft Genome Sequence of Xanthomonas translucens pv. graminis Pathotype Strain CFBP 2053.

scientific article published on 8 October 2015

Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

scientific article published on 29 August 2013

Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France

scientific article published on 22 April 2016

Effector Polymorphisms of the Sunflower Downy Mildew Pathogen Plasmopara halstedii and Their Use to Identify Pathotypes from Field Isolates

scientific article published on 4 February 2016

EffectorK, a comprehensive resource to mine for Ralstonia, Xanthomonas, and other published effector interactors in the Arabidopsis proteome

scientific article published on 15 August 2020

Family-Companion: analyse, visualise, browse, query and share your homology clusters

Full Genome Sequence Analysis of Two Isolates Reveals a Novel Xanthomonas Species Close to the Sugarcane Pathogen Xanthomonas albilineans.

scientific article published on 23 July 2015

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

scientific article

Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16 ⬇️

scientific article published on July 11, 2013

Genome Sequences of the Race 1 and Race 4 Xanthomonas campestris pv. campestris Strains CFBP 1869 and CFBP 5817.

scientific article published on 17 September 2015

Genome Sequencing of Ralstonia solanacearum Biovar 3, Phylotype I, Strains Rs-09-161 and Rs-10-244, Isolated from Eggplant and Chili in India.

scientific article

Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

scientific article

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

scientific article

Genomic Prediction of Sunflower Hybrids Oil Content.

scientific article published on 21 September 2017

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

scientific article

Genomic structure and phylogeny of the plant pathogen Ralstonia solanacearum inferred from gene distribution analysis.

scientific article

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

scientific article

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

scientific article

High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

scientific article

High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

scientific article published on 12 December 2013

High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

scientific article published on 12 February 2015

High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

scientific article published on September 2016

High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

scientific article published on 29 August 2013

High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

scientific article published on 12 December 2013

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

scientific article published on 24 January 2020

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

scientific article published on 30 May 2018

Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time

scientific article published on 04 September 2017

LeGOO: An Expertized Knowledge Database for the Model Legume Medicago truncatula

scientific article published on 01 January 2020

Microarray-based detection and typing of the Rhizobium nodulation gene nodC: potential of DNA arrays to diagnose biological functions of interest

scientific article published on December 2005

Microsatellite markers for characterization of native and introduced populations of Plasmopara viticola, the causal agent of grapevine downy mildew. ⬇️

scientific article

Mobyle: a new full web bioinformatics framework

scientific article published on 17 August 2009

Natural genetic variation of Xanthomonas campestris pv. campestris pathogenicity on arabidopsis revealed by association and reverse genetics.

scientific article published on 04 June 2013

Next-generation annotation of prokaryotic genomes with EuGene-P: application to Sinorhizobium meliloti 2011.

scientific article published on 18 April 2013

Pangenomic type III effector database of the plant pathogenic Ralstonia spp

scientific article published on 06 August 2019

Population genomics of apricots unravels domestication history and adaptive events

scientific article published on 25 June 2021

REMORA: a pilot in the ocean of BioMoby web-services

scientific article published on 19 January 2006

RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance.

scientific article published on 31 January 2015

RNA-Seq profile of flavescence dorée phytoplasma in grapevine.

scientific article

Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex.

scientific article

Specific genes from the potato brown rot strains of Ralstonia solanacearum and their potential use for strain detection

scientific article published on 01 September 2009

The Rosa genome provides new insights into the domestication of modern roses. ⬇️

scientific article published on 30 April 2018

The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome

scientific article published on 28 April 2008

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

scientific article

The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

scientific article

The xylan utilization system of the plant pathogen Xanthomonas campestris pv campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts.

scientific article

Transcriptional markers enable identification of rye-grass (Lolium sp.) plants with non-target-site-based resistance to herbicides inhibiting acetolactate-synthase

scientific article published on 20 January 2017

Transcriptome database resource and gene expression atlas for the rose

scientific article

Transcriptome-based identification of the Sinorhizobium meliloti NodD1 regulon.

scientific article

Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

scientific article

Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire.

scientific article published on 20 April 2018

Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula

scientific article

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

scientific article published on June 2016

Whole-Genome Sequencing of 10 Pseudomonas syringae Strains Representing Different Host Range Spectra.

scientific article published on 30 April 2015

Whole-genome landscape of Medicago truncatula symbiotic genes

article

myGenomeBrowser: building and sharing your own genome browser.

scientific article published on 23 December 2016

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