List of works by Manon Ragonnet-Cronin

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

scientific article published on 19 September 2016

A database for the epidemic trends and control measures during the first wave of COVID-19 in mainland China

scientific article published on 29 October 2020

Adaptive evolution of HIV at HLA epitopes is associated with ethnicity in Canada

scientific article

Analysis of the history and spread of HIV-1 in Uganda using phylodynamics

scientific article

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England

scientific article published on 25 March 2021

Automated analysis of phylogenetic clusters

scientific article

Baseline clinical HIV genotypes are a valid measure of transmitted drug resistance within the treatment-naive population

scientific article published on December 2013

Detailed phylogenetic analysis of primate T-lymphotropic virus type 1 (PTLV-1) sequences from orangutans (Pongo pygmaeus) reveals new insights into the evolutionary history of PTLV-1 in Asia

scientific article

FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences

scientific article published on 01 June 2019

Genetic diversity as a marker for timing infection in HIV-infected patients: evaluation of a 6-month window and comparison with BED.

scientific article published on 23 July 2012

Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions

scientific article published on 12 April 2021

Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

scientific article

HIV-1 modulates the tRNA pool to improve translation efficiency ⬇️

scientific article

Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.

scientific article published on 8 November 2016

Intrapatient viral diversity and treatment outcome in patients with genotype 3a hepatitis C virus infection on sofosbuvir-containing regimens

scientific article published on 7 November 2017

Lack of Effectiveness of Antiretroviral Therapy in Preventing HIV Infection in Serodiscordant Couples in Uganda: An Observational Study

scientific article published on 14 July 2015

Longitudinal phylogenetic surveillance identifies distinct patterns of cluster dynamics

scientific article published in September 2010

Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data

article

Phylogenetic analyses reveal HIV-1 infections between men misclassified as heterosexual transmissions

scientific article

Recent and Rapid Transmission of HIV among People who Inject Drugs in Scotland Revealed through Phylogenetic Analysis.

scientific article published on 13 March 2018

Reduction in mobility and COVID-19 transmission

scholarly article by Pierre Nouvellet published in 2021

SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China

scientific article published on 24 August 2020

Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region

scientific article published on 22 October 2020

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

scientific article published on 23 December 2015

Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data

scientific article

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

scientific article

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