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List of works by Emma B. Hodcroft

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

scientific article published on 19 September 2016

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

scientific article published on 07 January 2021

Automated analysis of phylogenetic clusters

scientific article

COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation ⬇️

scientific article published on 19 March 2020

Clonality, genetic variation, and the origin of isolated western populations of the carnivorous plant,Sarracenia alata1

article

Co-circulation of multiple enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20

scientific article published on 01 January 2020

Cryptic transmission of SARS-CoV-2 in Washington State

scientific article published on 06 April 2020

Cryptic transmission of SARS-CoV-2 in Washington state

scientific article published on 10 September 2020

Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020

scientific article published on 27 November 2020

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

scientific article published in 2022

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

scientific article published on 01 August 2020

Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.

scientific article published on 8 November 2016

Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing

scientific article published on 01 January 2019

Nextclade: clade assignment, mutation calling and quality control for viral genomes

scientific article published on 30 November 2021

Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data

article

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

scientific article published on 01 January 2020

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

scientific article published on 07 October 2016

Potential impact of seasonal forcing on a SARS-CoV-2 pandemic

scientific article

Potential impact of seasonal forcing on a SARS-CoV-2 pandemic

scientific article published on 16 March 2020

Preliminary case report on the SARS-CoV-2 cluster in the UK, France, and Spain

scientific article published on 27 February 2020

The International Virus Bioinformatics Meeting 2022

publication published on 05 May 2022

The contribution of viral genotype to plasma viral set-point in HIV infection

scientific article

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

scientific article published on 23 December 2015

Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck

scientific article published on 17 November 2020

Understanding disclosed and cryptic HIV transmission risk via genetic analysis: what are we missing and when does it matter?

scientific article published on 01 May 2019

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

scientific article

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