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List of works by Emma C Thomson

A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research

scientific article

Acute HCV/HIV coinfection is associated with cognitive dysfunction and cerebral metabolite disturbance, but not increased microglial cell activation

scientific article

Advances in hepatitis B and C.

scientific article published in October 2004

An elderly lady with sudden blindness and a sore foot.

scientific article published on 5 July 2005

Analysis of an Ebola virus disease survivor whose host and viral markers were predictive of death indicates the effectiveness of medical countermeasures and supportive care

scientific article published on 11 January 2021

Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland ⬇️

correction of a scholarly article

B-cell depletion reveals a role for antibodies in the control of chronic HIV-1 infection

scientific article

Broad Anti-Hepatitis C Virus (HCV) Antibody Responses Are Associated with Improved Clinical Disease Parameters in Chronic HCV Infection

scientific article published on 24 February 2016

COVID-19 and the cardiovascular system: implications for risk assessment, diagnosis, and treatment options

scientific article published on 30 April 2020

COVID-19 symptoms at hospital admission vary with age and sex: results from the ISARIC prospective multinational observational study

scientific article

Can Hepatitis C Virus (HCV) Direct-Acting Antiviral Treatment as Prevention Reverse the HCV Epidemic Among Men Who Have Sex With Men in the United Kingdom? Epidemiological and Modeling Insights

scientific article published on 16 February 2016

Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity

scientific article

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

scientific article published on 06 July 2016

Consensus recommendations for resistance testing in the management of chronic hepatitis C virus infection: Public Health England HCV Resistance Group

scientific article published on 16 October 2019

Convalescent plasma therapy for persistent hepatitis E virus infection

scientific article published on 08 May 2019

Delayed anti-HCV antibody response in HIV-positive men acutely infected with HCV.

scientific article published on January 2009

Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing

scientific article published on 14 May 2019

Diagnosing acute hepatitis C in HIV-infected patients: Nucleic acid testing compared with antibody and antigen–antibody detecting methods

article

Distemper, extinction, and vaccination of the Amur tiger

scientific article published on 23 November 2020

Does acute hepatitis C infection affect the central nervous system in HIV-1 infected individuals?

scientific article published on 25 September 2009

Dynamic coinfection with multiple viral subtypes in acute hepatitis C.

scientific article

Efficacy and safety of COVID-19 vaccines in older people

scientific article published on 02 December 2020

Efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine against SARS-CoV-2 variant of concern 202012/01 (B.1.1.7): an exploratory analysis of a randomised controlled trial

scientific article

Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2

scientific article

Epidemiology of hepatitis C virus infection in HIV-infected individuals

scientific article published on 23 April 2008

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

scientific article published on 19 November 2020

GLUE: A flexible software system for virus sequence data

GLUE: a flexible software system for virus sequence data

2018 scholarly article published in BMC Bioinformatics

Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity.

scientific article published on 22 January 2015

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - A high risk community-hospital interface

scientific article

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units - a high risk community-hospital interface

scientific article

Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

scholarly article

Glasgow Early Treatment Arm Favirpiravir (GETAFIX) for adults with early stage COVID-19: A structured summary of a study protocol for a randomised controlled trial

scientific article published on 19 November 2020

HIV positive patient with GBS-like syndrome

scientific article published on August 2017

Hepatitis C and the absence of genomic data in low-income countries: a barrier on the road to elimination?

scientific article published in October 2017

In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2

scientific article published on 17 September 2021

Increasing incidence of acute hepatitis C in individuals diagnosed with primary HIV in the United Kingdom

scientific article published on March 2008

Interferon lambda 4 impacts broadly on hepatitis C virus diversity

Interferon lambda 4 impacts the genetic diversity of hepatitis C virus

scientific article published on 03 September 2019

Interpreting Viral Deep Sequencing Data with GLUE

scientific article published on 03 April 2019

Late Ebola virus relapse causing meningoencephalitis: a case report

scientific article

Metagenomic next-generation sequencing aids the diagnosis of viral infections in febrile returning travellers

scientific article published on 06 August 2019

Mixed genotype hepatitis C infections and implications for treatment.

scientific article published on 13 January 2014

Mosquito-borne arboviruses in Uganda: history, transmission and burden

scientific article published on 24 June 2021

Natural NS3 resistance polymorphisms occur frequently prior to treatment in HIV-positive patients with acute hepatitis C.

scientific article published in September 2013

New highly diverse hepatitis C strains detected in sub-Saharan Africa have unknown susceptibility to direct-acting antiviral treatments

article

Next-generation sequencing sheds light on the natural history of hepatitis C infection in patients who fail treatment

scientific article published on 30 July 2014

Post-exposure prophylaxis with rVSV-ZEBOV following exposure to a patient with Ebola virus disease relapse in the UK: an operational, safety and immunogenicity report

scientific article published on 30 November 2019

Predicting spontaneous clearance of acute hepatitis C virus in a large cohort of HIV-1-infected men. ⬇️

scientific article

Prevalence of HCV NS3 pre-treatment resistance associated amino acid variants within a Scottish cohort

scientific article published on 9 February 2015

Progressive multifocal leukoencephalopathy: prolonged survival in patients treated with protease inhibitors and cidofovir: a case series

scientific article published in March 2006

Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland ⬇️

correction of a scholarly article

Quasispecies Changes with Distinctive Point Mutations in the Hepatitis C Virus Internal Ribosome Entry Site (IRES) Derived from PBMCs and Plasma

scientific article published on 19 November 2018

Reduced healthcare utilization following successful hepatitis C virus treatment in HIV-co-infected patients with mild liver disease

scientific article published on 29 October 2015

Reply to: No effect of resistance-associated substitutions in patients with rare HCV subtypes following treatment with sofosbuvir-containing regimens.

scientific article published on 12 January 2018

Reply: To PMID 24797101.

scientific article

Response to "Persistence of Neuropsychologic Deficits Despite Long-Term Highly Active Antiretroviral Therapy in Patients With HIV-Related Neurocognitive Impairment"

scientific article published on 01 December 2007

Response to DAA therapy in the NHS England Early Access Programme for rare HCV subtypes from low and middle income countries

scientific article

Response to Mallet et al., 'Nodular regenerative hyperplasia is a new cause of chronic liver disease in HIV-infected patients'

scientific article published on 01 July 2007

SARS-CoV-2 variants, spike mutations and immune escape

scientific article published in 2021

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

scientific article published on 05 August 2020

Safety and Efficacy of NVX-CoV2373 Covid-19 Vaccine

scientific article

Safety and efficacy of the ChAdOx1 nCoV-19 vaccine (AZD1222) against SARS-CoV-2: an interim analysis of four randomised controlled trials in Brazil, South Africa, and the UK

scientific article published on 08 December 2020

Septic thrombophlebitis with multiple pulmonary abscesses

scientific article published on 01 February 2003

Single-dose administration and the influence of the timing of the booster dose on immunogenicity and efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine: a pooled analysis of four randomised trials

scientific article published in February 2021

Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data

scientific article published on 15 March 2021

Suboptimal SVR rates in African patients with atypical genotype 1 subtypes: Implications for global elimination of hepatitis C

scientific article published on 07 August 2019

The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism

The natural history of early hepatitis C virus evolution; lessons from a global outbreak in human immunodeficiency virus-1-infected individuals

scientific article published on 20 July 2011

Tracking TCRβ Sequence Clonotype Expansions during Antiviral Therapy Using High-Throughput Sequencing of the Hypervariable Region

scientific article published on 5 April 2016

Two cases of possible transmitted drug-resistant HIV: likely HIV superinfection and unmasking of pre-existing resistance

scientific article published on 7 February 2015

Women in the European Virus Bioinformatics Center

scientific article published on 13 July 2022

periscope: sub-genomic RNA identification in SARS-CoV-2 Genomic Sequencing Data

scientific article published in July 2020

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