List of works - Francesco Neri

AKI Recovery Induced by Mesenchymal Stromal Cell-Derived Extracellular Vesicles Carrying MicroRNAs

scientific article

Cellular and epigenetic drivers of stem cell ageing

scientific article published on 01 September 2018

Characterization of an in vitro 3D intestinal organoid model by using massive RNAseq-based transcriptome profiling

scientific article published on 17 August 2021

Citron Kinase Deficiency Leads to Chromosomal Instability and TP53-Sensitive Microcephaly

scientific article published on February 2017

DNA methylation and demethylation dynamics

scientific article published on 8 October 2015

Dnmt3L antagonizes DNA methylation at bivalent promoters and favors DNA methylation at gene bodies in ESCs

scientific article

Endothelial cell adhesion to the extracellular matrix induces c-Src-dependent VEGFR-3 phosphorylation without the activation of the receptor intrinsic kinase activity

scientific article

Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals

scientific article

Establishment of a fluorescent reporter of RNA-polymerase II activity to identify dormant cells

scientific article published on 03 June 2021

FOSL1 controls the assembly of endothelial cells into capillary tubes by direct repression of αv and β3 integrin transcription

scientific article

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

scientific article

Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

scientific article published on January 2014

High-throughput single nucleotide variant discovery in E14 mouse embryonic stem cells provides a new reference genome assembly

scientific article

High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues

scientific article

High-throughput whole-genome sequencing of E14 mouse embryonic stem cells

scientific article published on 7 November 2014

Hypoxia controls Flvcr1 gene expression in Caco2 cells through HIF2α and ETS1.

scientific article published on 24 February 2014

Intragenic DNA methylation prevents spurious transcription initiation

scientific article published on 22 February 2017

MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets

scientific article

Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis

scientific article

Mutations in NOTCH1 PEST-domain orchestrate CCL19-driven homing of Chronic Lymphocytic Leukemia cells by modulating the tumor suppressor gene DUSP22.

scientific article published on 26 December 2016

Myc and max genome-wide binding sites analysis links the Myc regulatory network with the polycomb and the core pluripotency networks in mouse embryonic stem cells

scientific article published on 21 February 2014

Myc regulates the transcription of the PRC2 gene to control the expression of developmental genes in embryonic stem cells

scientific article published on 19 December 2011

PD-L1 up-regulation in melanoma increases disease aggressiveness and is mediated through miR-17-5p

scientific article published on 09 February 2017

RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data

scientific article

Renal Regenerative Potential of Different Extracellular Vesicle Populations Derived from Bone Marrow Mesenchymal Stromal Cells

scientific article published on 4 May 2017

Rictor/mTORC2 deficiency enhances keratinocyte stress tolerance via mitohormesis

scientific article

Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics

scientific article published on 05 February 2015

Snai1 promotes ESC exit from the pluripotency by direct repression of self-renewal genes

scientific article published on 01 March 2015

Snai1 represses Nanog to promote embryonic stem cell differentiation

scientific article published on 30 March 2015

TET1 is a tumour suppressor that inhibits colon cancer growth by derepressing inhibitors of the WNT pathway

scientific article

TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues

scientific article

The long intergenic non-coding RNA CCR492 functions as a let-7 competitive endogenous RNA to regulate c-Myc expression

scientific article published on 23 June 2016

List of works by Francesco Neri

AKI Recovery Induced by Mesenchymal Stromal Cell-Derived Extracellular Vesicles Carrying MicroRNAs

Cellular and epigenetic drivers of stem cell ageing

Characterization of an in vitro 3D intestinal organoid model by using massive RNAseq-based transcriptome profiling

Citron Kinase Deficiency Leads to Chromosomal Instability and TP53-Sensitive Microcephaly

DNA methylation and demethylation dynamics

Dnmt3L antagonizes DNA methylation at bivalent promoters and favors DNA methylation at gene bodies in ESCs

Endothelial cell adhesion to the extracellular matrix induces c-Src-dependent VEGFR-3 phosphorylation without the activation of the receptor intrinsic kinase activity

Epigenetic stress responses induce muscle stem-cell ageing by Hoxa9 developmental signals

Establishment of a fluorescent reporter of RNA-polymerase II activity to identify dormant cells

FOSL1 controls the assembly of endothelial cells into capillary tubes by direct repression of αv and β3 integrin transcription

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

High-throughput single nucleotide variant discovery in E14 mouse embryonic stem cells provides a new reference genome assembly

High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues

High-throughput whole-genome sequencing of E14 mouse embryonic stem cells

Hypoxia controls Flvcr1 gene expression in Caco2 cells through HIF2α and ETS1.

Intragenic DNA methylation prevents spurious transcription initiation

MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets

Methylation-assisted bisulfite sequencing to simultaneously map 5fC and 5caC on a genome-wide scale for DNA demethylation analysis

Mutations in NOTCH1 PEST-domain orchestrate CCL19-driven homing of Chronic Lymphocytic Leukemia cells by modulating the tumor suppressor gene DUSP22.

Myc and max genome-wide binding sites analysis links the Myc regulatory network with the polycomb and the core pluripotency networks in mouse embryonic stem cells

Myc regulates the transcription of the PRC2 gene to control the expression of developmental genes in embryonic stem cells

PD-L1 up-regulation in melanoma increases disease aggressiveness and is mediated through miR-17-5p

RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data

Renal Regenerative Potential of Different Extracellular Vesicle Populations Derived from Bone Marrow Mesenchymal Stromal Cells

Rictor/mTORC2 deficiency enhances keratinocyte stress tolerance via mitohormesis

Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics

Snai1 promotes ESC exit from the pluripotency by direct repression of self-renewal genes

Snai1 represses Nanog to promote embryonic stem cell differentiation

TET1 is a tumour suppressor that inhibits colon cancer growth by derepressing inhibitors of the WNT pathway

TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues

The long intergenic non-coding RNA CCR492 functions as a let-7 competitive endogenous RNA to regulate c-Myc expression