List of works - Fiona Fouhy

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform

scientific article

A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota.

scientific article

A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis.

scientific article published on 27 July 2017

Altered FXR signalling is associated with bile acid dysmetabolism in short bowel syndrome-associated liver disease.

scientific article

Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery.

scientific article

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

scientific article published on 5 February 2016

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models.

scientific article

Contrasting effects of Bifidobacterium breve NCIMB 702258 and Bifidobacterium breve DPC 6330 on the composition of murine brain fatty acids and gut microbiota.

scientific article

Divergent metabolic outcomes arising from targeted manipulation of the gut microbiota in diet-induced obesity.

scientific article published on 16 February 2012

Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon.

scientific article

Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota

scientific article published on 29 December 2020

Erratum to: The altered gut microbiota in adults with cystic fibrosis

scientific article published on 27 April 2017

High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin

scientific article

Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library.

scientific article

In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams

scientific article

Investigating the potential of fish oil as a nutraceutical in an animal model of early life stress

scientific article published on 31 July 2020

Microbial composition of human appendices from patients following appendectomy.

scientific article

Mid-life microbiota crises: middle age is associated with pervasive neuroimmune alterations that are reversed by targeting the gut microbiome

scientific article published on 16 May 2019

Perinatal factors affect the gut microbiota up to four years after birth

scientific article published on 03 April 2019

Proteomics as the final step in the functional metagenomics study of antimicrobial resistance.

scientific article

Short bowel syndrome (SBS)-associated alterations within the gut-liver axis evolve early and persist long-term in the piglet model of short bowel syndrome

scientific article

The altered gut microbiota in adults with cystic fibrosis

scientific article

The effects of freezing on faecal microbiota as determined using MiSeq sequencing and culture-based investigations.

scientific article

Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model

scientific article published on 23 February 2017

List of works by Fiona Fouhy

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform

A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota.

A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis.

Altered FXR signalling is associated with bile acid dysmetabolism in short bowel syndrome-associated liver disease.

Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery.

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models.

Contrasting effects of Bifidobacterium breve NCIMB 702258 and Bifidobacterium breve DPC 6330 on the composition of murine brain fatty acids and gut microbiota.

Divergent metabolic outcomes arising from targeted manipulation of the gut microbiota in diet-induced obesity.

Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon.

Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota

Erratum to: The altered gut microbiota in adults with cystic fibrosis

High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin

Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library.

In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams

Investigating the potential of fish oil as a nutraceutical in an animal model of early life stress

Microbial composition of human appendices from patients following appendectomy.

Mid-life microbiota crises: middle age is associated with pervasive neuroimmune alterations that are reversed by targeting the gut microbiome

Perinatal factors affect the gut microbiota up to four years after birth

Proteomics as the final step in the functional metagenomics study of antimicrobial resistance.

Short bowel syndrome (SBS)-associated alterations within the gut-liver axis evolve early and persist long-term in the piglet model of short bowel syndrome

The altered gut microbiota in adults with cystic fibrosis

The effects of freezing on faecal microbiota as determined using MiSeq sequencing and culture-based investigations.

Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model