List of works - Erwan Corre

-Omic analysis of Sepia officinalis white body: new insights into multifunctionality and haematopoiesis regulation

scientific article published on 09 July 2020

A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals

scientific article

A de novo approach to disentangle partner identity and function in holobiont systems.

scientific article

A haploid system of sex determination in the brown alga Ectocarpus sp.

scientific article published on 28 August 2014

A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence.

scientific article published on 28 April 2010

Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes.

scientific article published on 26 March 2018

Alterocin, an antibiofilm protein secreted by Pseudoalteromonas sp. 3J6

scientific article published on 07 August 2020

Amelotin Gene Structure and Expression during Enamel Formation in the Opossum Monodelphis domestica.

scientific article published on 17 July 2015

An expressed sequence tag analysis of the intertidal brown seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in response to abiotic stressors.

scientific article published on 17 July 2009

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network

scientific article published on 6 April 2018

Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

scientific article published in 2021

Author Correction: Chloropicophyceae, a new class of picophytoplanktonic prasinophytes ⬇️

scientific article published on 17 April 2020

Bioinformatics Pipeline for Transcriptome Sequencing Analysis.

scientific article published on January 2017

Characterization of mannuronan C-5-epimerase genes from the brown alga Laminaria digitata.

scientific article

Characterization of the neuropeptidome of a Southern Ocean decapod, the Antarctic shrimp Chorismus antarcticus: Focusing on a new decapod ITP-like peptide belonging to the CHH peptide family.

scientific article

Chloropicophyceae, a new class of picophytoplanktonic prasinophytes.

scientific article published on 25 October 2017

Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology

scientific article

Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census

scientific article published in 2023

Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas

scientific article published in 2022

Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Strains

article

Comparative analysis of five Mucor species transcriptomes

scientific article published on 05 September 2018

Comparative genomics applied to Mucor species with different lifestyles

scientific article published on 10 February 2020

Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle

scientific article (publication date: 2014)

Complete Genome Sequence of Methanohalophilus halophilus DSM 3094T, Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia

scientific article published on 16 February 2017

Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1T.

scientific article published on 18 January 2018

Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels

scientific article

Crustacean cardioactive peptides: expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis.

scientific article published on 23 December 2017

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach

scientific article published on 13 February 2020

Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

scientific article published on 30 October 2020

Deciphering the Infectious Process of Colletotrichum lupini in Lupin through Transcriptomic and Proteomic Analysis

scientific article published on 21 October 2020

Design of antimicrobial peptides from a cuttlefish database

scientific article published on 18 August 2018

Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast.

scientific article published on 17 November 2017

Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed

scientific article published on 02 October 2020

Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets. ⬇️

scientific article published on 24 May 2018

Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

scientific article published in 2023

Differential normal skin transcriptomic response in total body irradiated mice exposed to scattered versus scanned proton beams

scientific article published on 12 March 2021

Diversification, evolution and sub-functionalization of 70kDa heat-shock proteins in two sister species of antarctic krill: differences in thermal habitats, responses and implications under climate change

scientific article (publication date: 2015)

Diversity of Light Sensing Molecules and Their Expression During the Embryogenesis of the Cuttlefish (Sepia officinalis)

scientific article published on 29 September 2020

Dual role of the cuttlefish salivary proteome in defense and predation

scientific article

Erratum for Jouault et al., "Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6"

scientific article published on 10 November 2020

Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis

scholarly article published in Methods in Molecular Biology

Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria

scientific article published on 15 September 2020

First Viruses Infecting the Marine Diatom

scientific article published on 01 January 2018

First insights into the microbiome of a carnivorous sponge

scientific article

Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology

scientific article published on 01 January 2020

Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

scientific article published on 16 November 2019

Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella

scientific article published in 2022

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

scientific article published on 16 June 2009

Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata

scientific article

High-throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally

scientific article published on 23 March 2021

Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures.

scientific article published on 26 June 2015

How Egg Case Proteins Can Protect Cuttlefish Offspring?

scientific article

Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829)

scientific article published on 11 June 2020

Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: Functional and structural study of pteroicidin-α.

scientific article published on 3 November 2017

In-Depth In Silico Search for Cuttlefish (Sepia officinalis) Antimicrobial Peptides Following Bacterial Challenge of Haemocytes

scientific article published on 24 August 2020

Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift

scientific article published on 17 January 2020

Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?

scientific article published on 21 November 2019

Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus.

scientific article published on 13 March 2008

Marine Transcriptomics Analysis for the Identification of New Antimicrobial Peptides

scientific article published in 2021

Marine picocyanobacteria: Light utilization across latitudes

Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens

scientific article published on 14 December 2019

Methanohalophilus profundi sp. nov., a methylotrophic halophilic piezophilic methanogen isolated from a deep hypersaline anoxic basin

scientific article published on 27 June 2020

NADPH oxidases in Eukaryotes: red algae provide new hints!

scientific article

Neuropeptidome of the Cephalopod Sepia officinalis: Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying.

scientific article published on 3 December 2015

Nitric Oxide Mediates Nitrite-Sensing and Acclimation and Triggers a Remodeling of Lipids.

scientific article

Novel uncultured Epsilonproteobacteria dominate a filamentous sulphur mat from the 13 degrees N hydrothermal vent field, East Pacific Rise

scientific article published on 21 September 2006

Pallial mucus of the oyster Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus

scientific article published on 18 February 2014

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

scientific article published on 01 January 2021

Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms.

scientific article published on 28 May 2016

Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids

scientific article

Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

scientific article published on 06 January 2021

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.

scientific article published on 21 November 2016

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

scientific article published on 3 December 2021

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

scientific article published in 2022

Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics

scientific article published on 04 September 2020

Responses of the arcto-boreal krill species Thysanoessa inermis to variations in water temperature: coupling Hsp70 isoform expressions with metabolism

scientific article published on 25 August 2016

Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics

scientific article published on 07 August 2019

Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines

scientific article published on 06 May 2021

Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.).

scientific article published on 10 August 2020

Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga ectocarpus.

scientific article published on 27 February 2015

Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil

scientific article published on 14 March 2019

Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803

scientific article published on 24 July 2020

The Ectocarpus Genome and Brown Algal Genomics

article published in 2012

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

scientific article

The Toll/NF-κB pathway in cuttlefish symbiotic accessory nidamental gland

scientific article published on 2 July 2015

The genome of Ectocarpus subulatus - A highly stress-tolerant brown alga

scientific article published on 11 January 2020

The genome of Ectocarpus subulatus highlights unique mechanisms for stress tolerance in brown algae

The metagenomic data life-cycle: standards and best practices.

scientific article

Therapeutic Potential of a New Jumbo Phage That Infects , a Widespread Coral Pathogen

scientific article published on 24 October 2018

Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation

scientific article

Thermococcus marinus sp. nov. and Thermococcus radiotolerans sp. nov., two hyperthermophilic archaea from deep-sea hydrothermal vents that resist ionizing radiation

scientific article

Transcriptome analyses to investigate symbiotic relationships between marine protists

scientific article

Transcriptome and peptidome characterisation of the main neuropeptides and peptidic hormones of a euphausiid: the Ice Krill, Euphausia crystallorophias

scientific article

Transcriptomic analysis of clam extrapallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development

scientific article published on 13 August 2019

Transcriptomic and peptidomic analysis of protein hydrolysates from the white shrimp (L. vannamei)

scientific article published on 03 July 2014

Translatome analysis at the egg-to-embryo transition in sea urchin

scientific article published on 6 April 2018

WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data.

scientific article published on 3 September 2015

List of works by Erwan Corre

-Omic analysis of Sepia officinalis white body: new insights into multifunctionality and haematopoiesis regulation

A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals

A de novo approach to disentangle partner identity and function in holobiont systems.

A haploid system of sex determination in the brown alga Ectocarpus sp.

A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence.

Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes.

Alterocin, an antibiofilm protein secreted by Pseudoalteromonas sp. 3J6

Amelotin Gene Structure and Expression during Enamel Formation in the Opossum Monodelphis domestica.

An expressed sequence tag analysis of the intertidal brown seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in response to abiotic stressors.

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network

Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Author Correction: Chloropicophyceae, a new class of picophytoplanktonic prasinophytes ⬇️

Bioinformatics Pipeline for Transcriptome Sequencing Analysis.

Characterization of mannuronan C-5-epimerase genes from the brown alga Laminaria digitata.

Characterization of the neuropeptidome of a Southern Ocean decapod, the Antarctic shrimp Chorismus antarcticus: Focusing on a new decapod ITP-like peptide belonging to the CHH peptide family.

Chloropicophyceae, a new class of picophytoplanktonic prasinophytes.

Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology

Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census

Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas

Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Strains

Comparative analysis of five Mucor species transcriptomes

Comparative genomics applied to Mucor species with different lifestyles

Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle

Complete Genome Sequence of Methanohalophilus halophilus DSM 3094T, Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia

Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1T.

Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels

Crustacean cardioactive peptides: expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis.

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach

Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

Deciphering the Infectious Process of Colletotrichum lupini in Lupin through Transcriptomic and Proteomic Analysis

Design of antimicrobial peptides from a cuttlefish database

Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast.

Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed

Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets. ⬇️

Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

Differential normal skin transcriptomic response in total body irradiated mice exposed to scattered versus scanned proton beams

Diversification, evolution and sub-functionalization of 70kDa heat-shock proteins in two sister species of antarctic krill: differences in thermal habitats, responses and implications under climate change

Diversity of Light Sensing Molecules and Their Expression During the Embryogenesis of the Cuttlefish (Sepia officinalis)

Dual role of the cuttlefish salivary proteome in defense and predation

Erratum for Jouault et al., "Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6"

Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis

Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria

First Viruses Infecting the Marine Diatom

First insights into the microbiome of a carnivorous sponge

Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology

Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata

High-throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally

Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures.

How Egg Case Proteins Can Protect Cuttlefish Offspring?

Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829)

Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: Functional and structural study of pteroicidin-α.

In-Depth In Silico Search for Cuttlefish (Sepia officinalis) Antimicrobial Peptides Following Bacterial Challenge of Haemocytes

Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift

Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?

Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus.

Marine Transcriptomics Analysis for the Identification of New Antimicrobial Peptides

Marine picocyanobacteria: Light utilization across latitudes

Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens

Methanohalophilus profundi sp. nov., a methylotrophic halophilic piezophilic methanogen isolated from a deep hypersaline anoxic basin

NADPH oxidases in Eukaryotes: red algae provide new hints!

Neuropeptidome of the Cephalopod Sepia officinalis: Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying.

Nitric Oxide Mediates Nitrite-Sensing and Acclimation and Triggers a Remodeling of Lipids.

Novel uncultured Epsilonproteobacteria dominate a filamentous sulphur mat from the 13 degrees N hydrothermal vent field, East Pacific Rise

Pallial mucus of the oyster Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms.

Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids

Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics

Responses of the arcto-boreal krill species Thysanoessa inermis to variations in water temperature: coupling Hsp70 isoform expressions with metabolism

Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics

Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines

Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.).