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List of works by Josep Gregori

A comparative study of ultra-deep pyrosequencing and cloning to quantitatively analyze the viral quasispecies using hepatitis B virus infection as a model

scientific article published on 20 March 2013

An effect size filter improves the reproducibility in spectral counting-based comparative proteomics

scientific article published on 11 June 2013

Assessment of a Novel Automatic Real-Time PCR Assay on the Cobas 4800 Analyzer as a Screening Platform for Hepatitis C Virus Genotyping in Clinical Practice: Comparison with Massive Sequencing.

scientific article

Barrier-Independent, Fitness-Associated Differences in Sofosbuvir Efficacy against Hepatitis C Virus

scientific article published on 11 April 2016

Baseline hepatitis C virus resistance-associated substitutions present at frequencies lower than 15% may be clinically significant

scientific article published on 08 November 2018

Batch effects correction improves the sensitivity of significance tests in spectral counting-based comparative discovery proteomics

scientific article published on 12 May 2012

Characterization of intra- and inter-host norovirus P2 genetic variability in linked individuals by amplicon sequencing

scientific article published in PLoS ONE

Circulating pEGFR is a candidate response biomarker of cetuximab therapy in colorectal cancer

scientific article

Clinical application of estimating hepatitis B virus quasispecies complexity by massive sequencing: correlation between natural evolution and on-treatment evolution

scientific article

Complex Genotype Mixtures Analyzed by Deep Sequencing in Two Different Regions of Hepatitis B Virus

scientific article published on 29 December 2015

Correction for Quer at al., High-Resolution Hepatitis C Virus Subtyping Using NS5B Deep Sequencing and Phylogeny, an Alternative to Current Methods

scientific article published on July 2016

Deep sequencing in the management of hepatitis virus infections.

scientific article published on 28 December 2016

Deep-sequencing reveals broad subtype-specific HCV resistance mutations associated with treatment failure

scientific article published on 16 December 2019

Dissimilar Conservation Pattern in Hepatitis C Virus Mutant Spectra, Consensus Sequences, and Data Banks

scientific article published on 27 October 2020

Enhancing the Biological Relevance of Secretome-Based Proteomics by Linking Tumor Cell Proliferation and Protein Secretion

scientific article published on 15 July 2014

Epidemiological trends of HIV-1 infection in blood donors from Catalonia, Spain (2005-2014).

scientific article published on 5 July 2017

Evidence of an Exponential Decay Pattern of the Hepatitis Delta Virus Evolution Rate and Fluctuations in Quasispecies Complexity in Long-Term Studies of Chronic Delta Infection

scientific article

Extinction of hepatitis C virus by ribavirin in hepatoma cells involves lethal mutagenesis

scientific article published in 2013

Extracellular HMGA1 Promotes Tumor Invasion and Metastasis in Triple-Negative Breast Cancer

scientific article published on 22 August 2018

Hepatitis C virus deep sequencing for sub-genotype identification in mixed infections: A real-life experience

scientific article published on 15 December 2017

Hepatitis C virus early kinetics and resistance-associated substitution dynamics during antiviral therapy with direct-acting antivirals

scholarly article by Elena Perpiñán published in October 2018

High-resolution hepatitis C virus subtyping using NS5B deep sequencing and phylogeny, an alternative to current methods

scientific article

Host-dependent editing of SARS-CoV-2 in COVID-19 patients

scientific article published on 01 December 2021

Identification of hepatitis C virus genotype 3 by a commercial assay challenged by natural polymorphisms detected in Spain from patients with diverse origins.

scientific article

Identification of host and viral factors involved in a dissimilar resolution of a hepatitis C virus infection

scientific article published on 20 November 2013

Improving virus production through quasispecies genomic selection and molecular breeding.

scientific article

Increased replicative fitness can lead to decreased drug sensitivity of hepatitis C virus

scientific article published on 13 August 2014

Inference with viral quasispecies diversity indices: clonal and NGS approaches

scientific article published on 21 January 2014

Internal Disequilibria and Phenotypic Diversification during Replication of Hepatitis C Virus in a Noncoevolving Cellular Environment

scientific article published on 8 March 2017

Lethal Mutagenesis of Hepatitis C Virus Induced by Favipiravir.

scientific article

Molecular epidemiology and putative origin of hepatitis C virus in random volunteers from Argentina

scientific article published on September 2013

Naturally occurring SARS-CoV-2 gene deletions close to the spike S1/S2 cleavage site in the viral quasispecies of COVID19 patients

scientific article published on 05 August 2020

New real-time-PCR method to identify single point mutations in hepatitis C virus.

scientific article

Phylogenetic analysis of an epidemic outbreak of acute hepatitis C in HIV-infected patients by ultra-deep pyrosequencing.

scientific article published on 10 May 2017

Quasispecies dynamics in hepatitis C liver transplant recipients receiving grafts from hepatitis C virus infected donors

scientific article published on 21 September 2015

Rare haplotype load as marker for lethal mutagenesis

scientific article published in PLoS ONE

Red blood cell transfusion-transmitted acute hepatitis E in an immunocompetent subject in Europe: a case report

scientific article published on 26 October 2016

Resistance of Hepatitis C Virus to Inhibitors: Complexity and Clinical Implications

scientific article

Selection of the highly replicative and partially multidrug resistant rtS78T HBV polymerase mutation during TDF-ETV combination therapy

scientific article published on 6 April 2017

Ultra-deep pyrosequencing (UDPS) data treatment to study amplicon HCV minor variants.

scientific article

Viral quasispecies complexity measures.

scientific article

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