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List of works by Peter Andolfatto

A Genomic Map of the Effects of Linked Selection in Drosophila

scientific article

A population genetics-phylogenetics approach to inferring natural selection in coding sequences

scientific article

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

scientific article

Adaptive evolution of non-coding DNA in Drosophila

scientific article published in October 2005

Adaptive hitchhiking effects on genome variability.

scientific article

Adaptive substitutions underlying cardiac glycoside insensitivity in insects exhibit epistasis in vivo

scientific article published on 27 August 2019

An approximate bayesian estimator suggests strong, recurrent selective sweeps in Drosophila

scientific article

An evaluation of the hybrid speciation hypothesis for Xiphophorus clemenciae based on whole genome sequences

scientific article published on 20 December 2012

Ancient hybridization and genomic stabilization in a swordtail fish.

scientific article published on 3 March 2016

Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster

scientific article published on 19 November 2005

Assortative mating and persistent reproductive isolation in hybrids.

scientific article published on 25 September 2017

Changes throughout a Genetic Network Mask the Contribution of Hox Gene Evolution

scientific article published on 27 June 2019

Cloning and sequence of the gene encoding the muscle fatty acid binding protein from the desert locust, Schistocerca gregaria

scientific article published on April 2001

Concerted evolution reveals co-adapted amino acid substitutions in Na+K+-ATPase of frogs that prey on toxic toads

scientific article published in 2021

Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans

scientific article published in March 2001

Controlling type-I error of the McDonald-Kreitman test in genomewide scans for selection on noncoding DNA.

scientific article published on 14 September 2008

Correlated evolution of nearby residues in Drosophilid proteins

scientific article

Developmental changes of FABP concentration, expression, and intracellular distribution in locust flight muscle

scientific article published in June 1993

Different Evolutionary Strategies To Conserve Chromatin Boundary Function in the Bithorax Complex

scientific article published on 22 December 2016

Discordant divergence times among Z-chromosome regions between two ecologically distinct swallowtail butterfly species

scientific article published on April 2007

Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species

scientific article

Evolution of multiple additive loci caused divergence between Drosophila yakuba and D. santomea in wing rowing during male courtship

scientific article

Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al.

scientific article

Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group

scientific article

Fatty-acid-binding protein in locust flight muscle. Developmental changes of expression, concentration and intracellular distribution

scientific article published in December 1992

Genetic architecture and adaptive significance of the selfing syndrome in Capsella

scientific article published on 03 March 2012

Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans

scientific article

Genome sequencing reveals complex speciation in the Drosophila simulans clade

scientific article

Genome-wide QTL mapping of saltwater tolerance in sibling species of Anopheles (malaria vector) mosquitoes

scientific article

High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species.

scientific article

Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome

scientific article

How common is homoploid hybrid speciation?

scientific article published on 13 April 2014

How the manakin got its crown: A novel trait that is unlikely to cause speciation

article published in the Proceedings of the National Academy of Sciences of the United States of America

Inference of population structure under a Dirichlet process model

scientific article published on 21 January 2007

Inversion polymorphisms and nucleotide variability in Drosophila

scientific article published on 01 February 2001

Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans ⬇️

scientific article

Methods to detect selection on noncoding DNA

scientific article

Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations

scientific article

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

scientific article

Natural hybridization reveals incompatible alleles that cause melanoma in swordtail fish

scientific article published on 01 May 2020

Natural selection interacts with recombination to shape the evolution of hybrid genomes

scientific article published on 19 April 2018

No association between mitochondrial DNA haplotypes and a female-limited mimicry phenotype in Papilio glaucus

scientific article

On the utility of short intron sequences as a reference for the detection of positive and negative selection in Drosophila

scientific article

Parallel molecular evolution in an herbivore community

scientific article

Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila.

scientific article

Patterns of recombination in snakes reveal a tug-of-war between PRDM9 and promoter-like features

scientific article published on 22 February 2024

Pervasive natural selection in the Drosophila genome?

scientific article

Phylogenetic incongruence and the evolutionary origins of cardenolide-resistant forms of Na(+) ,K(+) -ATPase in Danaus butterflies

scientific article

Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes.

scientific article published on 4 April 2013

Population differences in olfaction accompany host shift in Drosophila mojavensis.

scientific article published in August 2016

Population genetics of the coral Acropora millepora: Toward genomic prediction of bleaching

scientific article published on 01 July 2020

Positive and negative selection on noncoding DNA in Drosophila simulans

scientific article published on 29 May 2008

Predictability in the evolution of Orthopteran cardenolide insensitivity

scientific article published on 03 June 2019

Progress and prospects in mapping recent selection in the genome.

scientific article published on 2 May 2007

Recombination and the frequency spectrum in Drosophila melanogaster and Drosophila simulans

scientific article published in March 2001

Reproductive isolation of hybrid populations driven by genetic incompatibilities

scientific article

Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group ⬇️

scientific article

Revisiting an old riddle: what determines genetic diversity levels within species?

scientific article

Selection, recombination and demographic history in Drosophila miranda

scientific article

Sexual Dimorphism and Retinal Mosaic Diversification Following the Evolution of a Violet Receptor in Butterflies

scientific article

Structurama: bayesian inference of population structure

scientific article published on 2 June 2011

Tandem Duplications and the Limits of Natural Selection in Drosophila yakuba and Drosophila simulans ⬇️

scientific article published on 15 July 2015

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

scientific article

The Impact of Natural Selection on the Genome: Emerging Patterns in Drosophila and Arabidopsis

scientific article published in 2008

The evolution of cardenolide-resistant forms of Na⁺,K⁺ -ATPase in Danainae butterflies

scientific article published on 29 November 2011

The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.

scientific article published in March 2008

The within-host dynamics of infection in trans-generationally primed flour beetles

scientific article

Transformed hairy roots of Mesembryantemum crystallinum: gene expression patterns upon salt stress

article

What do we mean when we talk about hybrid speciation?

scientific article published on 5 January 2018

X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution

scientific article

simMSG: an experimental design tool for high-throughput genotyping of hybrids.

scientific article published on 28 May 2015

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