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List of works by Denis C Bauer

A comparative study of techniques for differential expression analysis on RNA-Seq data

scientific article

A novel ENU-induced ankyrin-1 mutation impairs parasite invasion and increases erythrocyte clearance during malaria infection in mice.

scientific article

Adenosine monophosphate deaminase 3 activation shortens erythrocyte half-life and provides malaria resistance in mice.

scientific article published on 27 July 2016

Ankyrin-1 Gene Exhibits Allelic Heterogeneity in Conferring Protection Against Malaria.

scientific article

Blue: correcting sequencing errors using consensus and context.

scientific article

Cpipe: a shared variant detection pipeline designed for diagnostic settings

scientific article published on 10 July 2015

Early life events influence whole-of-life metabolic health via gut microflora and gut permeability

scientific article

Evaluation of computational programs to predict HLA genotypes from genomic sequencing data.

scientific article published in March 2018

Evidence for polygenic and oligogenic basis of Australian sporadic amyotrophic lateral sclerosis

scientific article published on 14 May 2020

Fast and accurate exhaustive higher-order epistasis search with BitEpi

scientific article published on 05 August 2021

Genetic Analysis of Tryptophan Metabolism Genes in Sporadic Amyotrophic Lateral Sclerosis

scientific article published on 14 June 2021

Genetic and Pathological Assessment of hnRNPA1, hnRNPA2/B1, and hnRNPA3 in Familial and Sporadic Amyotrophic Lateral Sclerosis

scientific article published on 11 November 2017

Genetic and immunopathological analysis of CHCHD10 in Australian amyotrophic lateral sclerosis and frontotemporal dementia and transgenic TDP-43 mice

scientific article published on 05 November 2019

Genome-wide analysis of chemically induced mutations in mouse in phenotype-driven screens

scientific article published on 26 October 2015

Genomics and personalised whole-of-life healthcare.

scientific article published on 04 May 2014

Gut permeability, its interaction with gut microflora and effects on metabolic health are mediated by the lymphatics system, liver and bile acid.

scientific article published on 3 August 2015

High Activity Target-Site Identification Using Phenotypic Independent CRISPR-Cas9 Core Functionality

scientific article published on 01 April 2018

Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.

scientific article

INSIDER: alignment-free detection of foreign DNA sequences

scientific article published on 29 June 2021

Interoperable medical data: the missing link for understanding COVID-19

scientific article published on 23 October 2020

Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes

scientific article published on 02 July 2019

Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression.

scientific article published on 4 June 2019

Mutation analysis of MATR3 in Australian familial amyotrophic lateral sclerosis.

scientific article published on 20 November 2014

NGSANE: a lightweight production informatics framework for high-throughput data analysis.

scientific article

STAR: predicting recombination sites from amino acid sequence

scientific article published on 8 October 2006

Sorting the nuclear proteome

scientific article published on July 2011

Targeted next-generation sequencing of 22 mismatch repair genes identifies Lynch syndrome families

scientific article published on 25 January 2016

The Current State and Future of CRISPR-Cas9 gRNA Design Tools

scientific article published on 12 July 2018

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

scientific article

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.

scientific article published on 06 April 2016

Unlocking HDR-mediated nucleotide editing by identifying high-efficiency target sites using machine learning

scientific article published on 26 February 2019

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9

scientific article published on 27 June 2019

VariantSpark: population scale clustering of genotype information.

scientific article published on 10 December 2015

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