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List of works by Emmanuel F Mongodin

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

scientific article published on 11 November 2005

A guild of forty-five CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

scientific article published on 06 October 2005

A novel tick protein supports integrity of gut peritrophic matrix impacting existence of gut microbiome and Lyme disease pathogens

scientific article published on 01 October 2020

A robust in vitro model for trans-lymphatic endothelial migration

scientific article

Advances in Serodiagnostic Testing for Lyme Disease Are at Hand

scientific article published on 7 December 2017

Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations.

scientific article

Amino acid metabolic signaling influences Aedes aegypti midgut microbiome variability.

scientific article published on 28 July 2017

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

scientific article

Analyzing endodontic infections by deep coverage pyrosequencing

scientific article published on 2 June 2010

Antibiotic-resistant Escherichia coli and Klebsiella spp. in greywater reuse systems and pond water used for agricultural irrigation in the West Bank, Palestinian Territories

scientific article published on 15 June 2020

Association between cigarette smoking and the vaginal microbiota: a pilot study

scientific article published on 28 August 2014

Association of Staphylococcus aureus Colonization with the Evolving Neonatal Nasal Microbiome and the Impact of Intranasal Mupirocin

scientific article published on 4 October 2017

Association of Systemic Antibiotic Treatment of Acne With Skin Microbiota Characteristics

scientific article published on 01 April 2019

Bacterial diversity in the oral cavity of 10 healthy individuals

scientific article

BorreliaBase: a phylogeny-centered browser of Borrelia genomes

scientific article

Changes in the microbiota cause genetically modified Anopheles to spread in a population.

scientific article published on 28 September 2017

Characterization and Analysis of the Skin Microbiota in Rosacea: A Case-Control Study

scientific article published on 01 February 2020

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences

scientific article

Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States

scientific article

Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications

scientific article published on 31 October 2019

Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin

scientific article published in August 2006

Comparison of the Microbiota of Older Adults Living in Nursing Homes and the Community

scientific article published on 13 September 2017

Comparison of the skin microbiota in acne and rosacea

scientific article published on 11 April 2020

Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12

scientific article published on 26 May 2015

Complete Genome Sequence of a Strain of Bifidobacterium pseudolongum Isolated from Mouse Feces and Associated with Improved Organ Transplant Outcome

scientific article published on 5 October 2017

Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus

scientific article

Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water

journal article published in 2018

Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershed

scientific article published on 22 June 2021

Creek to Table: Tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops

scientific article published on 12 February 2019

Culture-independent evaluation of the appendix and rectum microbiomes in children with and without appendicitis

scientific article

Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019

scientific article published on 08 October 2019

De-bugging the system: could antibiotics improve liver transplant outcomes?

scientific article published on 22 July 2019

Direct Diagnostic Tests for Lyme Disease

article

Effect of mupirocin for Staphylococcus aureus decolonization on the microbiome of the nose and throat in community and nursing home dwelling adults

scientific article published on 08 June 2021

Erratum for Martin et al., Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi Sensu Lato.

scientific article published on 21 July 2015

Erratum: Author Correction: High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia

article

Evolution of catabolic pathways: Genomic insights into microbial s-triazine metabolism

scientific article

Extensive genome rearrangements and multiple horizontal gene transfers in a population of pyrococcus isolates from Vulcano Island, Italy

scientific article (publication date: October 2008)

Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi

scientific article published on 06 June 2009

Fibronectin-binding proteins of Staphylococcus aureus are involved in adherence to human airway epithelium

scientific article

Functional genomic analyses of Enterobacter, Anopheles and Plasmodium reciprocal interactions that impact vector competence.

scientific article published on 22 August 2016

Galactomannan hydrolysis and mannose metabolism in Cellvibrio mixtus.

scientific article

Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species

scientific article published on July 2005

Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids.

scientific article

Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms

scientific article

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

scientific article published on 06 August 2019

Gut microbiota, tight junction protein expression, intestinal resistance, bacterial translocation and mortality following cholestasis depend on the genetic background of the host ⬇️

scientific article published on April 15, 2013

Gut microbiota-dependent modulation of innate immunity and lymph node remodeling affects cardiac allograft outcomes

scientific article published on 4 October 2018

Gut microbiota-dependent modulation of innate immunity and lymph node remodeling affects cardiac allograft outcomes

scientific article published on 06 August 2020

High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia.

scientific article

Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.

scientific article published on 5 September 2008

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus

scientific article published on 13 June 2008

Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain

scientific article

Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

scientific article

Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation.

scientific article

It's complicated!

scientific article published on 09 September 2019

Little cigars and cigarillos harbor diverse bacterial communities that differ between the tobacco and the wrapper

scientific article published on 22 February 2019

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

scientific article published in January 2005

Marcus Leonardo Boyd

scientific article published on 26 May 2021

Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens

scientific article published on 15 February 2017

Mentholation triggers brand-specific shifts in the bacterial microbiota of commercial cigarette products

scientific article published on 24 May 2020

Metabolically-active bacteria in reclaimed water and ponds revealed using bromodeoxyuridine DNA labeling coupled with 16S rRNA and shotgun sequencing

scientific article published on 16 July 2020

Metagenomic analysis of bacterial and viral assemblages from a freshwater creek and irrigated field reveals temporal and spatial dynamics

scientific article published on 25 November 2019

Microarray transcription analysis of clinical Staphylococcus aureus isolates resistant to vancomycin

scientific article published on August 2003

Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species

scientific article

Microbial metagenomics

scientific article

Microbiological Profile and Human Immune Response Associated with Peri-Implantitis: A Systematic Review

scientific article published on 05 October 2020

Microbiological effect of mupirocin and chlorhexidine for Staphylococcus aureus decolonization in community and nursing home based adults

scientific article published on 13 February 2017

Microbiota and Dose Response: Evolving Paradigm of Health Triangle

article

Microbiota—implications for immunity and transplantation

scientific article published on 12 May 2015

Perfect timing: circadian rhythms, sleep, and immunity - an NIH workshop summary

scientific article published on 16 January 2020

Perinatal HIV Infection and Exposure and their Association with Dental Caries in Nigerian Children

scientific article

Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium

scientific article published on 2 September 2011

Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi

scientific article

Plasticity in early immune evasion strategies of a bacterial pathogen

scientific article published on 2 April 2018

Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections

scientific article published on 24 June 2015

Potential role of the skin and gut microbiota in premenarchal vulvar lichen sclerosus: A pilot case-control study

scientific article published on 14 January 2021

Primordial origin and diversification of plasmids in Lyme disease agent bacteria

scientific article published on 27 March 2018

Prospective Observational Study of Bisphosphonate-Related Osteonecrosis of the Jaw in Multiple Myeloma: Microbiota Profiling and Cytokine Expression

scientific article published on 24 June 2021

Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus

scientific article published in March 2006

Quenching by sodium thiosulfate does not influence 16S rRNA gene sequencing profiles of reclaimed water from three sites in the Mid-Atlantic, United States

scientific article published on 15 February 2019

Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system

scientific article

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond

scientific article published on 28 October 2020

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.

scientific article

Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities

scientific article

Smokeless tobacco products harbor diverse bacterial microbiota that differ across products and brands.

scientific article published on 22 April 2017

Standardized metadata for human pathogen/vector genomic sequences

scientific article (publication date: 2014)

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

scientific article

Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions

scientific article published on 07 March 2017

Temporal instability of the post-surgical maxillary sinus microbiota.

scientific article

The Association Between the Developing Nasal Microbiota of Hospitalized Neonates and Colonization

The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions

scientific article published on 25 October 2019

The Oral Bacterial Communities of Children with Well-Controlled HIV Infection and without HIV Infection

scientific article published on 6 July 2015

The bacterial communities of the small intestine and stool in children with short bowel syndrome.

scientific article published on 16 May 2019

The first decade of microbial genomics: what have we learned and where are we going next?

scientific article

The importance of a multifaceted approach to characterizing the microbial flora of chronic wounds ⬇️

scientific article published on September 1, 2011

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

scientific article published in August 2008

The potential role of lung microbiota in lung cancer attributed to household coal burning exposures

scientific article

The respiratory tract microbiome and its relationship to lung cancer and environmental exposures found in rural china

scientific article published on 08 May 2019

Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis.

scientific article

Unique and specific Proteobacteria diversity in urinary microbiota of tolerant kidney transplanted recipients

scientific article published on 09 September 2019

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole genome sequence of an unusual Borrelia burgdorferi sensu lato isolate

scientific article published on 7 January 2011

Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii

scientific article

Whole-genome sequences of thirteen isolates of Borrelia burgdorferi

scientific article

Whole-genome sequences of two Borrelia afzelii and two Borrelia garinii Lyme disease agent isolates.

scientific article

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