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List of works by Nelle Varoquaux

A statistical approach for inferring the 3D structure of the genome

scientific article

Accurate identification of centromere locations in yeast genomes using Hi-C.

scientific article published on 4 May 2015

Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages.

scientific article

Community, Time, and (Con)text: A Dynamical Systems Analysis of Online Communication and Community Health among Open‐Source Software Communities

scientific article published in 2022

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics

scientific article published on 28 May 2021

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

scientific article

Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C

scientific article

Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparum

scientific article

The Types, Roles, and Practices of Documentation in Data Analytics Open Source Software Libraries

journal article from 'Computer Supported Cooperative Work-the Journal of Collaborative Computing' published in 2018

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

scientific article

Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses

scientific article published on 05 December 2019

Unfolding the Genome: The Case Study of P. falciparum

iced: fast and memory efficient normalization of contact maps

scientific article published on 03 April 2019

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