List of works - Bahram Parvin

A molecular method for the delivery of small molecules and proteins across the cell wall of algae using molecular transporters

scientific article

Applications of quantitative digital image analysis to breast cancer research

scientific article

Automatic Segmentation and Quantification of Filamentous Structures in Electron Tomography

scientific article (publication date: October 2012)

Basal subtype and MAPK/ERK kinase (MEK)-phosphoinositide 3-kinase feedback signaling determine susceptibility of breast cancer cells to MEK inhibition

scientific article published on January 2009

BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models

scientific article (publication date: 2016)

BioSig: an imaging bioinformatics system for phenotypic analysis

scientific article published in January 2003

Breast Fibroblasts Modulate Early Dissemination, Tumorigenesis, and Metastasis through Alteration of Extracellular Matrix Characteristics ⬇️

scientific article published on March 1, 2013

Buckyballs conjugated with nucleic acid sequences identifies microorganisms in live cell assays

scientific article

CD36 Repression Activates a Multicellular Stromal Program Shared by High Mammographic Density and Tumor Tissues ⬇️

scientific article published on July 9, 2012

CLASSIFICATION OF TUMOR HISTOPATHOLOGY VIA SPARSE FEATURE LEARNING.

scientific article

COMPARISON OF SPARSE CODING AND KERNEL METHODS FOR HISTOPATHOLOGICAL CLASSIFICATION OF GLIOBASTOMA MULTIFORME.

scientific article

Classification of Histology Sections via Multispectral Convolutional Sparse Coding

scientific article

Classification of Tumor Histology via Morphometric Context

scientific article published on June 2013

Coupled Segmentation of Nuclear and Membrane-bound Macromolecules through Voting and Multiphase Level Set.

scientific article

Erratum: Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density

scientific article

Exon-level microarray analyses identify alternative splicing programs in breast cancer

scientific article

Feature-Based Representation Improves Color Decomposition and Nuclear Detection Using a Convolutional Neural Network.

scientific article published in March 2018

Fluorinated analogs of malachite green: synthesis and toxicity

scientific article

Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments

scientific article published on 8 September 2015

Geometric approach to segmentation and protein localization in cell culture assays

scientific article published on January 2007

Graphical methods for quantifying macromolecules through bright field imaging

scientific article published on 14 August 2008

Harmonic cut and regularized centroid transform for localization of subcellular structures ⬇️

scientific article published on April 1, 2003

High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia

scientific article published in April 2018

High-resolution reconstruction of sparse data from dense low-resolution spatio-temporal data

scientific article

Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy

scientific article

Imaging features that discriminate between foci induced by high- and low-LET radiation in human fibroblasts

scientific article published in May 2006

Inference of causal networks from time-varying transcriptome data via sparse coding

scientific article

Integrated profiling of three dimensional cell culture models and 3D microscopy

scientific article published on 16 September 2013

Integrative data analysis predicts YY1 as a Cis-regulator in the 3D Cell Culture Models of MCF10A at the Stiffness Level of High Mammographic Density

article

Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association ⬇️

scientific article published on 04 December 2012

Ionizing radiation induces heritable disruption of epithelial cell interactions

scientific article

Iterative Tensor Voting for Perceptual Grouping of Ill-Defined Curvilinear Structures ⬇️

scientific article published on March 17, 2011

Iterative voting for inference of structural saliency and characterization of subcellular events

scientific article

Linking changes in epithelial morphogenesis to cancer mutations using computational modeling

scientific article (publication date: 2010)

MORPHOMETRIC SUBTYPING FOR A PANEL OF BREAST CANCER CELL LINES.

scientific article

Machine Learning and Data Mining in Medical Imaging.

scientific article published in September 2015

Microscopy environment for quantitative spatial and temporal analysis of multicellular interactions

Molecular deconstruction, detection, and computational prediction of microenvironment-modulated cellular responses to cancer therapeutics

scientific article

Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture

scientific article

Morphometic analysis of TCGA glioblastoma multiforme ⬇️

scientific article published on December 20, 2011

Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models ⬇️

scientific article published on August 26, 2010

Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions

scientific article published on 27 January 2011

Prediction of epigenetically regulated genes in breast cancer cell lines

scientific article

Scaling up graph-based semisupervised learning via prototype vector machines

scientific article

Segmentation of heterogeneous blob objects through voting and level set formulation

scientific article published on January 2007

Sparse multitask regression for identifying common mechanism of response to therapeutic targets

scientific article

Stacked Predictive Sparse Coding for Classification of Distinct Regions of Tumor Histopathology

scientific article published on January 2013

Stacked Predictive Sparse Decomposition for Classification of Histology Sections ⬇️

scientific article published on 23 December 2014

Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density

scientific article published on 07 July 2016

Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density

scientific article

Targeted and nontargeted effects of ionizing radiation that impact genomic instability

scientific article published in October 2008

When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections

scientific article published on 09 September 2016

List of works by Bahram Parvin

A molecular method for the delivery of small molecules and proteins across the cell wall of algae using molecular transporters

Applications of quantitative digital image analysis to breast cancer research

Automatic Segmentation and Quantification of Filamentous Structures in Electron Tomography

Basal subtype and MAPK/ERK kinase (MEK)-phosphoinositide 3-kinase feedback signaling determine susceptibility of breast cancer cells to MEK inhibition

BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models

BioSig: an imaging bioinformatics system for phenotypic analysis

Breast Fibroblasts Modulate Early Dissemination, Tumorigenesis, and Metastasis through Alteration of Extracellular Matrix Characteristics ⬇️

Buckyballs conjugated with nucleic acid sequences identifies microorganisms in live cell assays

CD36 Repression Activates a Multicellular Stromal Program Shared by High Mammographic Density and Tumor Tissues ⬇️

CLASSIFICATION OF TUMOR HISTOPATHOLOGY VIA SPARSE FEATURE LEARNING.

COMPARISON OF SPARSE CODING AND KERNEL METHODS FOR HISTOPATHOLOGICAL CLASSIFICATION OF GLIOBASTOMA MULTIFORME.

Classification of Histology Sections via Multispectral Convolutional Sparse Coding

Classification of Tumor Histology via Morphometric Context

Coupled Segmentation of Nuclear and Membrane-bound Macromolecules through Voting and Multiphase Level Set.

Erratum: Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density

Exon-level microarray analyses identify alternative splicing programs in breast cancer

Feature-Based Representation Improves Color Decomposition and Nuclear Detection Using a Convolutional Neural Network.

Fluorinated analogs of malachite green: synthesis and toxicity

Functionalized Buckyballs for Visualizing Microbial Species in Different States and Environments

Geometric approach to segmentation and protein localization in cell culture assays

Graphical methods for quantifying macromolecules through bright field imaging

Harmonic cut and regularized centroid transform for localization of subcellular structures ⬇️

High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia

High-resolution reconstruction of sparse data from dense low-resolution spatio-temporal data

Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy

Imaging features that discriminate between foci induced by high- and low-LET radiation in human fibroblasts

Inference of causal networks from time-varying transcriptome data via sparse coding

Integrated profiling of three dimensional cell culture models and 3D microscopy

Integrative data analysis predicts YY1 as a Cis-regulator in the 3D Cell Culture Models of MCF10A at the Stiffness Level of High Mammographic Density

Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association ⬇️

Ionizing radiation induces heritable disruption of epithelial cell interactions

Iterative Tensor Voting for Perceptual Grouping of Ill-Defined Curvilinear Structures ⬇️

Iterative voting for inference of structural saliency and characterization of subcellular events

Linking changes in epithelial morphogenesis to cancer mutations using computational modeling

MORPHOMETRIC SUBTYPING FOR A PANEL OF BREAST CANCER CELL LINES.

Machine Learning and Data Mining in Medical Imaging.

Microscopy environment for quantitative spatial and temporal analysis of multicellular interactions

Molecular deconstruction, detection, and computational prediction of microenvironment-modulated cellular responses to cancer therapeutics

Molecular predictors of 3D morphogenesis by breast cancer cell lines in 3D culture

Morphometic analysis of TCGA glioblastoma multiforme ⬇️

Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models ⬇️

Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions

Prediction of epigenetically regulated genes in breast cancer cell lines

Scaling up graph-based semisupervised learning via prototype vector machines

Segmentation of heterogeneous blob objects through voting and level set formulation

Sparse multitask regression for identifying common mechanism of response to therapeutic targets

Stacked Predictive Sparse Coding for Classification of Distinct Regions of Tumor Histopathology

Stacked Predictive Sparse Decomposition for Classification of Histology Sections ⬇️

Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density

Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density

Targeted and nontargeted effects of ionizing radiation that impact genomic instability

When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections