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List of works by Gerald Weber

An analysis of the feasibility of short read sequencing

scientific article

An asymmetric mesoscopic model for single bulges in RNA.

scientific article

Comment on "SCS: signal, context, and structure features for genome-wide human promoter recognition".

scientific article published on 27 September 2011

DNA terminal base pairs have weaker hydrogen bonds especially for AT under low salt concentration.

scientific article published on November 2015

DNA/RNA hybrid mesoscopic model shows strong stability dependence with deoxypyrimidine content and stacking interactions similar to RNA/RNA

Deoxyinosine mismatch parameters calculated with a mesoscopic model result in uniform hydrogen bonding and strongly variable stacking interactions

article

Finite-enthalpy model parameters from DNA melting temperatures

article

Liquid-liquid phase separation and fibrillation of the prion protein modulated by a high-affinity DNA aptamer

scientific article published on 22 November 2019

Mesoscopic model parametrization of hydrogen bonds and stacking interactions of RNA from melting temperatures.

scientific article

Mesoscopic modelling of Cy3 and Cy5 dyes attached to DNA duplexes

scientific article published on 27 September 2017

Nearest-neighbour parameters optimized for melting temperature prediction of DNA/RNA hybrids at high and low salt concentrations

scientific article published on 16 May 2019

Optimal Probe Length Varies for Targets with High Sequence Variation: Implications for Probe Library Design for Resequencing Highly Variable Genes

scientific article (publication date: 18 June 2008)

Optimization method for obtaining nearest-neighbour DNA entropies and enthalpies directly from melting temperatures

scientific article published on 12 November 2014

Origin of multiple periodicities in the Fourier power spectra of the Plasmodium falciparum genome

scientific article

Probing the microscopic flexibility of DNA from melting temperatures

Replacing salt correction factors with optimized RNA nearest-neighbour enthalpy and entropy parameters

scientific article published on 17 January 2019

Sharp DNA denaturation due to solvent interaction

Thermal equivalence of DNA duplexes for probe design

scientific article published on 17 December 2008

Thermal equivalence of DNA duplexes without calculation of melting temperature

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