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List of works by David L. Jones

A diversity of diversities: Do complex environmental effects underpin associations between below‐ and above‐ground taxa?

scientific article published on 15 May 2024

A mathematical model of water and nutrient transport in xylem vessels of a wheat plant

scientific article

A novel biologically-based approach to evaluating soil phosphorus availability across complex landscapes

scholarly article by Thomas H. DeLuca et al published September 2015 in Soil Biology and Biochemistry

A plant perspective on nitrogen cycling in the rhizosphere

scientific article published on 09 February 2019

A quantitative risk assessment for the safety of carcase storage systems for scrapie infected farms

scientific article published on 21 July 2014

A stable bioluminescent construct of Escherichia coli O157:H7 for hazard assessments of long-term survival in the environment.

scientific article

A systematic review of the effectiveness of liming to mitigate impacts of river acidification on fish and macro-invertebrates

scientific article published on 22 May 2013

Absence of E coli O157:H7 in sheep and cattle faeces in North Wales ⬇️

scientific article published on July 6, 2013

Acetamiprid fate in a sandy loam with contrasting soil organic matter contents: A comparison of the degradation, sorption and leaching of commercial neonicotinoid formulations

scientific article published in 2022

Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat

scientific article

Agronomic amendments drive a diversity of real and apparent priming responses within a grassland soil

scientific article published in 2024

Alleviation of Both Water and Nutrient Limitations is Necessary to Accelerate Ecological Restoration of Waste Rock Tips

scientific article published in 2011

Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic

scientific article published on 17 October 2019

Antibacterial action of chitosan-arginine against Escherichia coli O157 in chicken juice

scientific article published in 2012

Application of nanoscale secondary ion mass spectrometry to plant cell research

scientific article published on June 2010

Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity

scientific article published on 28 January 2019

Assessing biochar ecotoxicology for soil amendment by root phytotoxicity bioassays

scientific article published on 16 February 2016

Auxin secretion by Bacillus amyloliquefaciens FZB42 both stimulates root exudation and limits phosphorus uptake in Triticum aestivium

scientific article

Bacterial growth and respiration responses upon rewetting dry forest soils: Impact of drought-legacy

article

Bacterial salt tolerance is unrelated to soil salinity across an arid agroecosystem salinity gradient

Bioplastic (PHBV) addition to soil alters microbial community structure and negatively affects plant-microbial metabolic functioning in maize

scientific article published in 2023

Bioreduction of sheep carcasses effectively contains and reduces pathogen levels under operational and simulated breakdown conditions.

scientific article published on 02 May 2013

Can a mesotrophic grassland community be restored on a post-industrial sandy site with compost made from waste materials?

article published in 2011

Can macrophyte harvesting from eutrophic water close the loop on nutrient loss from agricultural land?

scientific article

Cattle grazing drives nitrogen and carbon cycling in a temperate salt marsh

scholarly article by Ylva S. Olsen et al published March 2011 in Soil Biology and Biochemistry

Challenging the paradigm of nitrogen cycling: no evidence of in situ resource partitioning by coexisting plant species in grasslands of contrasting fertility

scientific article published on 23 December 2014

Changes in microbial community composition drive the response of ecosystem multifunctionality to elevated ozone

scientific article published in 2022

Changes in the physicochemical properties and enzymatic activity of waste during bioreduction of pig carcasses.

scientific article

Climate warming masks the negative effect of microplastics on plant-soil health in a silt loam soil

scientific article published in 2022

Comparative toxicity of nanoparticulate CuO and ZnO to soil bacterial communities

scientific article

Competition between plant and bacterial cells at the microscale regulates the dynamics of nitrogen acquisition in wheat (Triticum aestivum).

scientific article published on 12 July 2013

Correction to: Long-Term Recovery of Microbial Communities in the Boreal Bryosphere Following Fire Disturbance

scientific article published on 01 February 2020

Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective

scientific article

Crop residues exacerbate the negative effects of extreme flooding on soil quality

scientific article published on 19 June 2017

Decay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations

scientific article published on 30 March 2016

Declining reactivation ability of Escherichia coli O157 following incubation within soil

scientific article published in 2013

Delineating and mapping riparian areas for ecosystem service assessment

scientific article

Detecting macroecological patterns in bacterial communities across independent studies of global soils.

scientific article published on 20 November 2017

Determining patterns in the composition of dissolved organic matter in fresh waters according to land use and management

scientific article published in 2022

Determining the influence of environmental and edaphic factors on the fate of the nitrification inhibitors DCD and DMPP in soil

scientific article published on 27 December 2017

Development of Microbial Diversity and Functional Potential in Bauxite Residue Sand under Rehabilitation

scientific article published in 2010

Different ways in which CO2 can be released during the turnover of roots in soil

Dissolved organic nitrogen uptake by plants—an important N uptake pathway?

article

Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs.

scientific article

Earthworms as vectors of Escherichia coli O157:H7 in soil and vermicomposts

scientific article published in October 2006

Effect of the earthworms Lumbricus terrestris and Aporrectodea caliginosa on bacterial diversity in soil

scientific article

Effectiveness of cooking to reduce norovirus and infectious F-specific RNA bacteriophage concentrations in Mytilus edulis

scientific article published on 2 June 2014

Effects of grazing on the acquisition of nitrogen by plants and microorganisms in an alpine grassland on the Tibetan plateau

article

Effects of plastic residues and microplastics on soil ecosystems: A global meta-analysis

scientific article published in 2022

Efficacy of mitigation measures for reducing greenhouse gas emissions from intensively cultivated peatlands

scientific article published in 2018

Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment.

scientific article published on 24 January 2017

Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples

scientific article published on 8 April 2017

Evaluation of dissolved organic carbon as a soil quality indicator in national monitoring schemes

scientific article

Evaluation of mesofauna communities as soil quality indicators in a national-level monitoring programme

scholarly article by Paul B.L. George et al published December 2017 in Soil Biology and Biochemistry

Experimental evidence for drought induced alternative stable states of soil moisture

scientific article published on 25 January 2016

Extreme flood events at higher temperatures exacerbate the loss of soil functionality and trace gas emissions in grassland

scientific article published on 21 December 2018

FT-IR as an alternative method for measuring chemical properties during composting

scientific article published on 23 March 2010

Fate of pathogens in a simulated bioreduction system for livestock carcasses.

scientific article

Feather moss nitrogen acquisition across natural fertility gradients in boreal forests

article

Feed the crop not the soil: rethinking phosphorus management in the food chain

scientific article published on 3 June 2014

Ferrous iron- and ammonium-rich diffuse vents support habitat-specific communities in a shallow hydrothermal field off the Basiluzzo Islet (Aeolian Volcanic Archipelago).

scientific article published on 6 April 2017

Fertilizer application during primary succession changes the structure of plant and herbivore communities

article

Field response of N2O emissions, microbial communities, soil biochemical processes and winter barley growth to the addition of conventional and biodegradable microplastics

scientific article published in 2022

Fungal and bacterial growth following the application of slurry and anaerobic digestate of livestock manure to temperate pasture soils

article published in 2012

Fungal root endophytes of the carnivorous plant Drosera rotundifolia

scientific article published on 09 December 2009

Greenhouse gas emissions from intensively managed peat soils in an arable production system

scientific article published in 2017

Greenhouse gas production, diffusion and consumption in a soil profile under maize and wheat production

scientific article published in 2023

Heat and lime-treatment as effective control methods for E. coli O157:H7 in organic wastes

scientific article published on 31 January 2009

Heavy metal contamination of a mixed waste compost: metal speciation and fate.

scientific article published on 9 May 2009

High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream

scientific article published on 17 November 2020

High resolution synchrotron imaging of wheat root hairs growing in soil and image based modelling of phosphate uptake

scientific article published on 22 April 2013

How changing root system architecture can help tackle a reduction in soil phosphate (P) levels for better plant P acquisition

scientific article published on 24 June 2014

How significant to plant N nutrition is the direct consumption of soil microbes by roots?

scientific article published on 30 May 2013

Hydrological Effects on Below Ground Processes in Temperate and Mediterranean Forests

article by Boris Rewald et al published 2010 in Ecological Studies

Imaging the interaction of roots and phosphate fertiliser granules using 4D X-ray tomography

scientific article

Importance of researching the mechanisms underpinning the restoration of whole ecosystem diversity

In situ mapping of nutrient uptake in the rhizosphere using nanoscale secondary ion mass spectrometry

scientific article published on 07 October 2009

In-vessel bioreduction provides an effective storage and pre-treatment method for livestock carcasses prior to final disposal

scientific article published on 5 April 2009

Increased bioavailability of metals in two contrasting agricultural soils treated with waste wood-derived biochar and ash.

scientific article

Influence of slurry acidification with H2SO4 on soil pH, N, P, S, and C dynamics: Incubation experiment

scientific article published in 2023

Interactive effects of organic acids in the rhizosphere

Investigating the long-term legacy of drought and warming on the soil microbial community across five European shrubland ecosystems

scientific article

Is biochar a source or sink for polycyclic aromatic hydrocarbon (PAH) compounds in agricultural soils?

Is the fate of glucose-derived carbon more strongly driven by nutrient availability, soil texture, or microbial biomass size?

scholarly article by Courtney A. Creamer et al published December 2016 in Soil Biology and Biochemistry

Is the ‘enzyme latch’ or ‘iron gate’ the key to protecting soil organic carbon in peatlands?

scientific article published in 2019

LDPE and biodegradable PLA-PBAT plastics differentially affect plant-soil nitrogen partitioning and dynamics in a Hordeum vulgare mesocosm

scientific article published in 2023

Lack of correlation between turnover of low-molecular-weight dissolved organic carbon and differences in microbial community composition or growth across a soil pH gradient

scientific article published on 18 February 2011

Land use effects on soil phosphorus behavior characteristics in the eutrophic aquatic-terrestrial ecotone of Dianchi Lake, China

scientific article published in 2021

Leaf dry matter content is better at predicting above-ground net primary production than specific leaf area

article

Life at the extreme: Plant-driven hotspots of soil nutrient cycling in the hyper-arid core of the Atacama Desert

scientific article published in 2023

Livestock-induced N2O emissions may limit the benefits of converting cropland to grazed grassland as a greenhouse gas mitigation strategy for agricultural peatlands

scientific article published in 2021

Living roots magnify the response of soil organic carbon decomposition to temperature in temperate grassland

scientific article

Long-Term Drought and Warming Alter Soil Bacterial and Fungal Communities in an Upland Heathland

scientific article published on 19 October 2021

Long-Term Recovery of Microbial Communities in the Boreal Bryosphere Following Fire Disturbance.

scientific article

Loss of low molecular weight dissolved organic carbon (DOC) and nitrogen (DON) in H2O and 0.5M K2SO4 soil extracts

article

Metal contaminated biochar and wood ash negatively affect plant growth and soil quality after land application

scientific article published on 27 May 2014

Methodological bias associated with soluble protein recovery from soil

scientific article published on 25 July 2018

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

scientific article published on 24 February 2016

Microbial competition for nitrogen and carbon is as intense in the subsoil as in the topsoil

scientific article published in 2018

Microbial diversity and activity are increased by compost amendment of metal-contaminated soil.

scientific article published in January 2010

Microbial turnover of above and belowground litter components in shrublands

scientific article published in 2016

Microbial uptake and utilization of low molecular weight organic substrates in soil depend on carbon oxidation state

article

Microbial use of low molecular weight DOM in filtered and unfiltered freshwater: Role of ultra-small microorganisms and implications for water quality monitoring.

scientific article published on 24 April 2017

Migration of heavy metals in soil as influenced by compost amendments

scientific article published on 20 September 2009

Modelling Nutrient Uptake by Individual Hyphae of Arbuscular Mycorrhizal Fungi: Temporal and Spatial Scales for an Experimental Design ⬇️

scientific article published on January 12, 2011

Modification of Fertility of Soil Materials for Restoration of Acid Grassland Habitat

article by Mark Farrell et al published 12 March 2010 in Restoration Ecology

Moss-cyanobacteria associations as biogenic sources of nitrogen in boreal forest ecosystems

scientific article

N2 Fixation in Feather Mosses is a Sensitive Indicator of N Deposition in Boreal Forests

article

Nano-Sized and Filterable Bacteria and Archaea: Biodiversity and Function

scientific article published on 21 August 2018

Nitrification represents the bottle-neck of sheep urine patch N2O emissions from extensively grazed organic soils

scientific article published on 06 August 2019

Nutrient (C, N and P) enrichment induces significant changes in the soil metabolite profile and microbial carbon partitioning

Nutrient dynamics, microbial growth and weed emergence in biochar amended soil are influenced by time since application and reapplication rate

article

Oligopeptides Represent a Preferred Source of Organic N Uptake: A Global Phenomenon?

scientific article published on 05 October 2012

On pedagogy of a Soil Science Centre for Doctoral Training

scientific article

Organic acids in the rhizosphere – a critical review

article

Organic and inorganic sulfur and nitrogen uptake by co-existing grassland plant species competing with soil microorganisms

scientific article published in 2022

Oxalate and ferricrocin exudation by the extramatrical mycelium of an ectomycorrhizal fungus in symbiosis with Pinus sylvestris.

scientific article published on January 2006

Persistence and metabolic activity of Escherichia coli O157:H7 in farm animal faeces.

scientific article

Persistence, dissipation, and activity of Escherichia coli O157:H7 within sand and seawater environments

scientific article

Phosphate depletion modulates auxin transport in Triticum aestivum leading to altered root branching

scientific article

Phosphorus acquisition by wheat from organic and inorganic sources labelled with 32P and 33P radioisotopes

scientific article published in 2020

Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment

scientific article published on 17 October 2017

Plant acquisition and metabolism of the synthetic nitrification inhibitor dicyandiamide and naturally-occurring guanidine from agricultural soils

article

Plant and mycorrhizal regulation of rhizodeposition

article

Plant-microbe competition: does injection of isotopes of C and N into the rhizosphere effectively characterise plant use of soil N?

scientific article published on 09 September 2018

Predicting the dispersal of SARS-CoV-2 RNA from the wastewater treatment plant to the coast

scientific article published in 2022

Priming of the decomposition of ageing soil organic matter: concentration dependence and microbial control

article

Quantifying the contribution of riparian soils to the provision of ecosystem services

scientific article published on 19 December 2017

RNA-viromics reveals diverse communities of soil RNA viruses with the potential to affect grassland ecosystems across multiple trophic levels

scientific article published in 2022

Rapid peptide metabolism: A major component of soil nitrogen cycling?

scientific article published in 2011

Reduction of Methane Emission during Slurry Storage by the Addition of Effective Microorganisms and Excessive Carbon Source from Brewing Sugar

scientific article published in November 2016

Remediation of metal polluted mine soil with compost: Co-composting versus incorporation

article

Response of root respiration and root exudation to alterations in root C supply and demand in wheat

Response of soil microbial community to afforestation with pure and mixed species

Response of soil phosphorus fractions and fluxes to different vegetation restoration types in a subtropical mountain ecosystem

scientific article published on 16 May 2020

Responsible agriculture must adapt to the wetland character of mid‐latitude peatlands

scientific article published in 2022

Rice rhizodeposition and carbon stabilisation in paddy soil are regulated via drying-rewetting cycles and nitrogen fertilisation

scientific article published in 2017

Rice rhizodeposition and its utilization by microbial groups depends on N fertilization

Riparian research and legislation, are they working towards the same common goals? A UK case study

scientific article published on 07 February 2018

Root exudate components change litter decomposition in a simulated rhizosphere depending on temperature

Rye cover crop incorporation and high watertable mitigate greenhouse gas emissions in cultivated peatland

scientific article published in 2019

Saltwater intrusion induces shifts in soil microbial diversity and carbon use efficiency in a coastal grassland ecosystem

scientific article published in 2022

Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters

scientific article published on 18 April 2018

Seasonal nitrous oxide emissions from different land uses and their controlling factors in a tropical riparian ecosystem

scientific article published on 18 June 2012

Seasonal variation is a bigger driver of soil faunal and microbial community composition than exposure to the neonicotinoid acetamiprid within Brassica napus production systems

scientific article published in 2023

Sediment composition influences spatial variation in the abundance of human pathogen indicator bacteria within an estuarine environment

scientific article

Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19

scientific article published on 31 July 2020

Soil microbial organic nitrogen uptake is regulated by carbon availability

Soil respiration across three contrasting ecosystem types: comparison of two portable IRGA systems

article

Spatial and temporal heterogeneity of bacteria across an intertidal shellfish bed: implications for regulatory monitoring of faecal indicator organisms.

scientific article

Spatial co-localisation of extreme weather events: a clear and present danger

scientific article published on 12 October 2020

Spatial patterns and environmental constraints on ecosystem services at a catchment scale

scientific article

Spatial zoning of microbial functions and plant-soil nitrogen dynamics across a riparian area in an extensively grazed livestock system

scientific article published on 16 February 2018

Stability and dynamics of enzyme activity patterns in the rice rhizosphere: Effects of plant growth and temperature

article

Stoichiometric constraints on the microbial processing of carbon with soil depth along a riparian hillslope

scientific article published on 10 October 2018

Stoichiometric controls upon low molecular weight carbon decomposition

scholarly article by Courtney A. Creamer et al published December 2014 in Soil Biology and Biochemistry

Struvite: a slow-release fertiliser for sustainable phosphorus management?

scientific article published on 11 December 2015

Substrate control of sulphur utilisation and microbial stoichiometry in soil: Results of 13C, 15N, 14C, and 35S quad labelling

scientific article published on 11 May 2021

Sustainable nutrient management at field, farm and regional level: Soil testing, nutrient budgets and the trade-off between lime application and greenhouse gas emissions

Temperature adaptation of bacterial growth and 14C-glucose mineralisation in a laboratory study

Temporal dynamics of carbon partitioning and rhizodeposition in wheat

scientific article published on 5 February 2004

Testing the assertion that ‘local food is best’: the challenges of an evidence-based approach

article

The Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria ⬇️

scientific article published on 03 January 2012

The environmental and biosecurity characteristics of livestock carcass disposal methods: A review.

scientific article published on 08 January 2011

The fate of amino acid and peptide as affected by soil depth and fertilization regime in subtropical paddies

scientific article published in 2023

The interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters.

scientific article

The long-term uncertainty of biodegradable mulch film residues and associated microplastics pollution on plant-soil health

scientific article published in 2023

The mobility of nitrification inhibitors under simulated ruminant urine deposition and rainfall: a comparison between DCD and DMPP

article published in 2016

The resilience of nitrogen fixation in feather moss (Pleurozium schreberi)-cyanobacteria associations after a drying and rewetting cycle

scientific article published in 2013

The soil microbial community and plant biomass differentially contribute to the retention and recycling of urinary-N in grasslands

scientific article published in 2023

Thresholds of biodiversity and ecosystem function in a forest ecosystem undergoing dieback

scientific article published on 28 July 2017

Topsoil and subsoil C and N turnover are affected by superficial lime and gypsum application in the short-term

scientific article published in 2021

Turnover of low molecular weight dissolved organic C (DOC) and microbial C exhibit different temperature sensitivities in Arctic tundra soils

article

Unearthing human pathogens at the agricultural–environment interface: A review of current methods for the detection of Escherichia coli O157 in freshwater ecosystems

scientific article published in 2011

Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges

scientific article published on 5 September 2016

Use of composts in the remediation of heavy metal contaminated soil.

scientific article published on 20 October 2009

Use of untargeted metabolomics for assessing soil quality and microbial function

scientific article published in 2020

Using the concentration-dependence of respiration arising from glucose addition to estimate in situ concentrations of labile carbon in grassland soil

article

Utilization of low molecular weight organic compounds by the filterable fraction of a lotic microbiome

scientific article published on 02 December 2020

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses.

scientific article

Volatile organic compounds (VOCs) allow sensitive differentiation of biological soil quality

scientific article published in 2021

Warming alters competition for organic and inorganic nitrogen between co-existing grassland plant species

article

Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19

scientific article published on 12 June 2020

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