List of works - Solon P Pissis

A Fast and Efficient Algorithm for Mapping Short Sequences to a Reference Genome ⬇️

scientific article published on January 1, 2010

Algorithms for mapping short degenerate and weighted sequences to a reference genome.

scientific article published on 4 January 2009

An optimal algorithm for computing all subtree repeats in trees.

scientific article published on 21 April 2014

CNEFinder: finding conserved non-coding elements in genomes

scientific article published on 01 September 2018

Circular sequence comparison: algorithms and applications

scientific article published on 10 May 2016

Erratum to: Circular sequence comparison: algorithms and applications

scientific article published on 27 July 2016

Fast algorithms for approximate circular string matching.

scientific article

Fast phylogenetic inference from typing data.

scientific article published on 15 February 2018

GapMis: a tool for pairwise sequence alignment with a single gap.

scientific article published in August 2013

MARS: improving multiple circular sequence alignment using refined sequences

scientific article

MoTeX-II: structured MoTif eXtraction from large-scale datasets

scientific article

On avoided words, absent words, and their application to biological sequence analysis.

scientific article

Optimal computation of all tandem repeats in a weighted sequence

scientific article published on 16 August 2014

Querying highly similar sequences.

scientific article published on 21 February 2013

Transcriptome activity of isochores during preimplantation process in human and mouse.

scientific article published on 9 June 2016

Transcriptome map of mouse isochores in embryonic and neonatal cortex.

scientific article

Transcriptome map of mouse isochores.

scientific article

emMAW: computing minimal absent words in external memory

scientific article

libFLASM: a software library for fixed-length approximate string matching.

scientific article

libgapmis: extending short-read alignments.

scientific article

List of works by Solon P Pissis

A Fast and Efficient Algorithm for Mapping Short Sequences to a Reference Genome ⬇️

Algorithms for mapping short degenerate and weighted sequences to a reference genome.

An optimal algorithm for computing all subtree repeats in trees.

CNEFinder: finding conserved non-coding elements in genomes

Circular sequence comparison: algorithms and applications

Erratum to: Circular sequence comparison: algorithms and applications

Fast algorithms for approximate circular string matching.

Fast phylogenetic inference from typing data.

GapMis: a tool for pairwise sequence alignment with a single gap.

MARS: improving multiple circular sequence alignment using refined sequences

MoTeX-II: structured MoTif eXtraction from large-scale datasets

On avoided words, absent words, and their application to biological sequence analysis.

Optimal computation of all tandem repeats in a weighted sequence

Querying highly similar sequences.

Transcriptome activity of isochores during preimplantation process in human and mouse.

Transcriptome map of mouse isochores in embryonic and neonatal cortex.

Transcriptome map of mouse isochores.

emMAW: computing minimal absent words in external memory

libFLASM: a software library for fixed-length approximate string matching.

libgapmis: extending short-read alignments.