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List of works by Tamotsu Yoshimori

A current perspective of autophagosome biogenesis

scientific article published on 03 December 2013

A sensitive and quantitative technique for detecting autophagic events based on lysosomal delivery

scientific article

A single-amino-acid mutation in hepatitis C virus NS5A disrupting FKBP8 interaction impairs viral replication

scientific article

A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation

scientific article

ALIS are stress-induced protein storage compartments for substrates of the proteasome and autophagy

scientific article

Alfy, a novel FYVE-domain-containing protein associated with protein granules and autophagic membranes

scientific article

An Atg4B mutant hampers the lipidation of LC3 paralogues and causes defects in autophagosome closure

scientific article

An initial step of GAS-containing autophagosome-like vacuoles formation requires Rab7

scientific article

Artificial induction of autophagy around polystyrene beads in nonphagocytic cells

scientific article published on 12 January 2010

Atg14L recruits PtdIns 3-kinase to the ER for autophagosome formation

scientific article published in April 2011

Atg16L2, a novel isoform of mammalian Atg16L that is not essential for canonical autophagy despite forming an Atg12–5-16L2 complex ⬇️

scientific article published on December 1, 2011

Atg4B(C74A) hampers autophagosome closure: a useful protein for inhibiting autophagy

scientific article

Atg9A trafficking through the recycling endosomes is required for autophagosome formation.

scientific article published in September 2016

Atg9a controls dsDNA-driven dynamic translocation of STING and the innate immune response

scientific article

Autophagic control of listeria through intracellular innate immune recognition in drosophila

scientific article published on 06 July 2008

Autophagic degradation of unfolding proteins

scientific article

Autophagic elimination of misfolded procollagen aggregates in the endoplasmic reticulum as a means of cell protection

scientific article published on 08 April 2009

Autophagosome formation in mammalian cells

scientific article

Autophagosome formation in response to intracellular bacterial invasion

scientific article published on 24 September 2014

Autophagosomes can support Yersinia pseudotuberculosis replication in macrophages

scientific article published on 23 February 2010

Autophagosomes form at ER-mitochondria contact sites

scientific article

Autophagy Eliminates Group A Streptococcus Invading Host Cells

Autophagy Has a Significant Role in Determining Skin Color by Regulating Melanosome Degradation in Keratinocytes ⬇️

scientific article published on April 4, 2013

Autophagy Inhibits the Accumulation of Advanced Glycation End Products by Promoting Lysosomal Biogenesis and Function in the Kidney Proximal Tubules

scientific article published on 28 February 2017

Autophagy and Longevity

scientific article published on 23 January 2018

Autophagy and autophagy-related proteins in the immune system

scientific article published on September 2015

Autophagy and bacterial infectious diseases ⬇️

scientific article published on February 29, 2012

Autophagy and kidney inflammation

scientific article

Autophagy as a bulk protein degradation system: it plays various roles

scientific article

Autophagy controls Salmonella infection in response to damage to the Salmonella-containing vacuole

scientific article published on 22 February 2006

Autophagy creates a CTL epitope that mimics tumor-associated antigens

scientific article

Autophagy guards against cisplatin-induced acute kidney injury

scientific article published in February 2012

Autophagy in innate immunity against intracellular bacteria

scientific article published on August 2006

Autophagy induced by HIF1α overexpression supports trophoblast invasion by supplying cellular energy

scientific article

Autophagy induced by calcium phosphate precipitates targets damaged endosomes

scientific article

Autophagy requires endoplasmic reticulum targeting of the PI3-kinase complex via Atg14L.

scientific article

Autophagy sequesters damaged lysosomes to control lysosomal biogenesis and kidney injury

scientific article

Autophagy vs. Group A Streptococcus

scientific article

Autophagy, Inflammation, and Metabolism (AIM) Center in its second year

scientific article published on 15 July 2019

Autophagy, Inflammation, and Metabolism (AIM) Center of Biomedical Research Excellence: supporting the next generation of autophagy researchers and fostering international collaborations

scientific article published on 01 January 2018

Autophagy: a regulated bulk degradation process inside cells

scientific article published on January 2004

Autophagy: from discovery of the marker to debate on membrane biogenesis

scientific article published on February 1, 2011

Autophagy: paying Charon's toll

scientific article published on March 2007

Bacterial secretion system skews the fate of Legionella-containing vacuoles towards LC3-associated phagocytosis

scientific article published on 20 March 2017

Beclin-1-interacting autophagy protein Atg14L targets the SNARE-associated protein Snapin to coordinate endocytic trafficking

scientific article

Beyond starvation: An update on the autophagic machinery and its functions

scientific article published on 09 December 2015

Binding Rubicon to cross the Rubicon.

scientific article

Bornavirus Closely Associates and Segregates with Host Chromosomes to Ensure Persistent Intranuclear Infection ⬇️

scientific article published on May 17, 2012

CHMP5 is essential for late endosome function and down-regulation of receptor signaling during mouse embryogenesis

scientific journal article

Chemical modulators of autophagy as biological probes and potential therapeutics

scientific article published on January 2011

Cholesterol depletion facilitates ubiquitylation of NPC1 and its association with SKD1/Vps4

scientific article

Cochaperone Activity of Human Butyrate-Induced Transcript 1 Facilitates Hepatitis C Virus Replication through an Hsp90-Dependent Pathway

scientific article (publication date: October 2009)

Combinational soluble N-ethylmaleimide-sensitive factor attachment protein receptor proteins VAMP8 and Vti1b mediate fusion of antimicrobial and canonical autophagosomes with lysosomes

scientific article published on 20 January 2010

Coronavirus replication complex formation utilizes components of cellular autophagy

scientific article published on 29 December 2003

Critical Roles for Lipomannan and Lipoarabinomannan in Cell Wall Integrity of Mycobacteria and Pathogenesis of Tuberculosis ⬇️

scientific article published on February 19, 2013

Defects in autophagosome-lysosome fusion underlie Vici syndrome, a neurodevelopmental disorder with multisystem involvement

scientific article

Differential involvement of Atg16L1 in Crohn disease and canonical autophagy: analysis of the organization of the Atg16L1 complex in fibroblasts

scientific article published on 25 September 2009

Dynein-dependent movement of autophagosomes mediates efficient encounters with lysosomes

scientific article

Dysfunction of autophagy participates in vacuole formation and cell death in cells replicating hepatitis C virus

scientific article published on 12 October 2011

Dysregulation of autophagy in melanocytes contributes to hypopigmented macules in tuberous sclerosis complex

scientific article published on 11 November 2017

Electron tomography reveals the endoplasmic reticulum as a membrane source for autophagosome formation

scientific article

Endothelial cells are intrinsically defective in xenophagy of Streptococcus pyogenes.

scientific article

Endothelial nitric-oxide synthase antisense (NOS3AS) gene encodes an autophagy-related protein (APG9-like2) highly expressed in trophoblast

scientific article

Escape of intracellular Shigella from autophagy

scientific article

Functional analysis of alpha5beta1 integrin and lipid rafts in invasion of epithelial cells by Porphyromonas gingivalis using fluorescent beads coated with bacterial membrane vesicles

scientific article published on 4 April 2008

GFP-like proteins stably accumulate in lysosomes

scientific article published on 6 February 2008

Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation

scientific article

Group a Streptococcus: a loser in the battle with autophagy

scientific article published on January 2009

Guidelines for the use and interpretation of assays for monitoring autophagy

scientific article

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

scientific article

Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes

scientific article

Host cell autophagy activated by antibiotics is required for their effective antimycobacterial drug action

scientific article published in May 2012

Host defense mechanism by autophagy

scientific article

How autophagy saves mice: A cell-autonomous defense system against Sindbis virus infection

scientific article published in February 2010

Human IAPP-induced pancreatic β cell toxicity and its regulation by autophagy

scientific article

Human RME-8 is involved in membrane trafficking through early endosomes

scientific article

Hyperuricemia-induced inflammasome and kidney diseases

scientific article published on 31 March 2015

Impaired autophagy by soluble endoglin, under physiological hypoxia in early pregnant period, is involved in poor placentation in preeclampsia

scientific article published on 15 January 2013

In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker

scientific article

Inhibition of autophagy potentiates the antitumor effect of the multikinase inhibitor sorafenib in hepatocellular carcinoma

scientific article

Inhibition of macroautophagy triggers apoptosis

scientific article

Insulin-dependent signaling regulates azurophil granule-selective macroautophagy in human myeloblastic cells

scientific article published on 2 September 2003

Intracellular fate of Ureaplasma parvum entrapped by host cellular autophagy

scientific article

LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury

scientific article published on 28 September 2020

LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation

scientific article

Linking of autophagy to ubiquitin-proteasome system is important for the regulation of endoplasmic reticulum stress and cell viability

scientific article published on 9 July 2007

Listeria monocytogenes evades killing by autophagy during colonization of host cells

scientific article

Localization of mammalian NAD(P)H steroid dehydrogenase-like protein on lipid droplets

scientific article (publication date: 19 September 2003)

Loss of RUBCN/rubicon in adipocytes mediates the upregulation of autophagy to promote the fasting response

scientific article published in 2022

Lysophagy: A Method for Monitoring Lysosomal Rupture Followed by Autophagy-Dependent Recovery

scientific article published in January 2017

Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B

scientific article

Maturation of fimbria precursor protein by exogenous gingipains in Porphyromonas gingivalis gingipain-null mutant

scientific article published on 6 June 2007

Membrane recruitment of autophagy proteins in selective autophagy ⬇️

scientific article published on January 11, 2012

Mitochondrial division occurs concurrently with autophagosome formation but independently of Drp1 during mitophagy

scientific article

Modulation of local PtdIns3P levels by the PI phosphatase MTMR3 regulates constitutive autophagy

scientific article

Molecular basis of canonical and bactericidal autophagy

scientific article published on 07 September 2009

Molecular definitions of autophagy and related processes.

scientific article published on 08 June 2017

Molecular dissection of internalization of Porphyromonas gingivalis by cells using fluorescent beads coated with bacterial membrane vesicle

scientific article

Monitoring autophagy in mammalian cultured cells through the dynamics of LC3.

scientific article published in January 2009

Morphological analysis of autophagy

scientific article

Mouse Apg10 as an Apg12-conjugating enzyme: analysis by the conjugation-mediated yeast two-hybrid method

scientific article (publication date: 18 December 2002)

Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate

scientific article (publication date: May 2003)

Mutation in VPS33A affects metabolism of glycosaminoglycans: a new type of mucopolysaccharidosis with severe systemic symptoms

scientific journal article

New insights into autophagosome-lysosome fusion

scientific article published on 16 March 2017

Nordihydroguaiaretic acid affects multiple dynein-dynactin functions in interphase and mitotic cells

scientific article published on 14 November 2006

Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B

scientific article

PIKfyve Kinase and SKD1 AAA ATPase define distinct endocytic compartments. Only PIKfyve expression inhibits the cell-vacoulating activity of Helicobacter pylori VacA toxin

scientific article published on 3 September 2002

Phosphorylation of p62 activates the Keap1-Nrf2 pathway during selective autophagy

scientific article

Porphyromonas gingivalis outer membrane vesicles enter human epithelial cells via an endocytic pathway and are sorted to lysosomal compartments

scientific article published on 3 August 2009

Protective role of autophagy against Vibrio cholerae cytolysin, a pore-forming toxin from V. cholerae

scholarly article

Proteome of ubiquitin/MVB pathway: possible involvement of iron-induced ubiquitylation of transferrin receptor in lysosomal degradation ⬇️

scientific article published on March 11, 2011

Reciprocal conversion of Gtr1 and Gtr2 nucleotide-binding states by Npr2-Npr3 inactivates TORC1 and induces autophagy

scientific article

Regulation of dsDNA-induced innate immune responses by membrane trafficking

scientific article published on 25 April 2010

Regulation of epidermal growth factor receptor down-regulation by UBPY-mediated deubiquitination at endosomes

scientific journal article

Regulation of intracellular accumulation of mutant Huntingtin by Beclin 1

scientific article

Regulation of lysosomal phosphoinositide balance by INPP5E is essential for autophagosome-lysosome fusion

scientific article published on 7 October 2016

Regulation of membrane biogenesis in autophagy via PI3P dynamics

scientific article published on 18 April 2010

Role of the Apg12 conjugation system in mammalian autophagy

scientific article

Rubicon and PLEKHM1 negatively regulate the endocytic/autophagic pathway via a novel Rab7-binding domain

scientific article published on 13 October 2010

SKD1 AAA ATPase-dependent endosomal transport is involved in autolysosome formation

scientific article (publication date: February 2002)

Sera from patients with type 2 diabetes and neuropathy induce autophagy and colocalization with mitochondria in SY5Y cells

scientific article published on 2 October 2005

Small GTPase proteins Rin and Rit Bind to PAR6 GTP-dependently and regulate cell transformation

scientific article published on 14 April 2005

Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism

scientific article

Survival of parvovirus B19-infected cells by cellular autophagy

scientific article published on 27 April 2006

TRAPPIII is responsible for vesicular transport from early endosomes to Golgi, facilitating Atg9 cycling in autophagy

scientific article

The ALG-2-interacting protein Alix associates with CHMP4b, a human homologue of yeast Snf7 that is involved in multivesicular body sorting

scientific article

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy

scientific article

The C/EBP beta isoform 34-kDa LAP is responsible for NF-IL-6-mediated gene induction in activated macrophages, but is not essential for intracellular bacteria killing

scientific journal article

The LC3 recruitment mechanism is separate from Atg9L1-dependent membrane formation in the autophagic response against Salmonella

scientific article

The PtdIns3-phosphatase MTMR3 interacts with mTORC1 and suppresses its activity

scientific journal article

The Ubi brothers reunited

scientific article

The autophagosome: origins unknown, biogenesis complex

scientific article

The first molecular evidence that autophagy relates rimmed vacuole formation in chloroquine myopathy

scientific article published on May 2002

The origin of the autophagosomal membrane ⬇️

scientific article published on September 1, 2010

The stent-eluting drugs sirolimus and paclitaxel suppress healing of the endothelium by induction of autophagy

scientific article

Three-Axis Model for Atg Recruitment in Autophagy against Salmonella

scientific article published on 28 February 2012

Tom1, a VHS Domain-containing Protein, Interacts with Tollip, Ubiquitin, and Clathrin ⬇️

scientific article published on October 15, 2003

Toward unraveling membrane biogenesis in mammalian autophagy

scientific article published on 28 May 2008

Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages

scientific article

Ubc4/5 and c-Cbl continue to ubiquitinate EGF receptor after internalization to facilitate polyubiquitination and degradation

scientific article

Ubiquitination-mediated autophagy against invading bacteria ⬇️

scientific article published on March 28, 2011

Up-to-date membrane biogenesis in the autophagosome formation ⬇️

scientific article published on 08 April 2013

Virulence of Porphyromonas gingivalis is altered by substitution of fimbria gene with different genotype

scientific article published on November 2006

Where do they come from? Insights into autophagosome formation

scientific article published on 25 February 2010

[Molecular mechanism of autophagosome formation in mammalian cells].

scientific article

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