List of works - Guido Jej Hooiveld

3-Hydroxy-3-methylglutaryl-coenzyme A reductase inhibitors (statins) induce hepatic expression of the phospholipid translocase mdr2 in rats

scientific journal article

A 12-wk whole-grain wheat intervention protects against hepatic fat: the Graandioos study, a randomized trial in overweight subjects

scientific article published on 01 December 2018

A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load.

scientific article

A Robust Auxin Response Network Controls Embryo and Suspensor Development through a Basic Helix Loop Helix Transcriptional Module

scientific article published on 20 December 2018

A cholesterol-free, high-fat diet suppresses gene expression of cholesterol transporters in murine small intestine.

scientific article

A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine.

scientific article published on 16 January 2013

ANGPTL4 promotes bile acid absorption during taurocholic acid supplementation via a mechanism dependent on the gut microbiota.

scientific article published on 18 July 2017

An Integrated Statistical Approach to Compare Transcriptomics Data Across Experiments: A Case Study on the Identification of Candidate Target Genes of the Transcription Factor PPARα

scientific article

Angptl4 protects against severe proinflammatory effects of saturated fat by inhibiting fatty acid uptake into mesenteric lymph node macrophages

scientific article

Caspase-1 deficiency in mice reduces intestinal triglyceride absorption and hepatic triglyceride secretion

scientific article published on 17 November 2012

Characterization of stem cell-derived liver and intestinal organoids as a model system to study nuclear receptor biology.

scientific article published on 9 December 2016

Circadian misalignment induces fatty acid metabolism gene profiles and compromises insulin sensitivity in human skeletal muscle

article published in the Proceedings of the National Academy of Sciences of the United States of America

Comparative Proteomics Provides Insights into Metabolic Responses in Rat Liver to Isolated Soy and Meat Proteins

article

Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human

scientific article

Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon.

scientific article published on 17 June 2015

Conjugated linoleic acid enhances transepithelial calcium transport in human intestinal-like Caco-2 cells: An insight into molecular changes

scientific article published on 02 May 2006

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

scientific article published on 24 January 2019

Dietary soy and meat proteins induce distinct physiological and gene expression changes in rats

scientific article published on 9 February 2016

Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance

scholarly article

Distinct physiological, plasma amino acid, and liver transcriptome responses to purified dietary beef, chicken, fish, and pork proteins in young rats

scientific article published on 2 February 2016

Dose-dependent effects of dietary fat on development of obesity in relation to intestinal differential gene expression in C57BL/6J mice

scientific article

Effect of synthetic dietary triglycerides: a novel research paradigm for nutrigenomics.

scientific article

Effects of resistant starch on behaviour, satiety-related hormones and metabolites in growing pigs.

scientific article

Erratum to “Function and Regulation of ATP-binding cassette transport proteins involved in hepatobiliary transport”

scholarly article published in European Journal of Pharmaceutical Sciences

Expression of protocadherin gamma in skeletal muscle tissue is associated with age and muscle weakness

scientific article published on 2 February 2016

Feedback regulation of cardiac fatty acid uptake is mediated by Angptl4

Fermentation Kinetics of Selected Dietary Fibers by Human Small Intestinal Microbiota Depend on the Type of Fiber and Subject

scientific article published on 12 September 2020

Function and regulation of ATP-binding cassette transport proteins involved in hepatobiliary transport

scientific article

Function and regulation of ATP-binding cassette transport proteins involved in hepatobiliary transport

scientific article published on 01 February 2001

Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting

scientific article

Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs.

scientific article published on 2 May 2014

Genome-wide analysis of PPARα activation in murine small intestine

scientific article published on 10 April 2007

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon

scientific article published on 27 July 2015

Gut-derived short-chain fatty acids are vividly assimilated into host carbohydrates and lipids.

scientific article

Hepatic overexpression of cAMP-responsive element modulator α induces a regulatory T-cell response in a murine model of chronic liver disease.

scientific article published on 29 September 2016

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways

scientific article

Increasing fish consumption does not affect genotoxicity markers in the colon in an intervention study

scientific article published on 27 October 2009

Induction of lipid oxidation by polyunsaturated fatty acids of marine origin in small intestine of mice fed a high-fat diet.

scientific article

Inflammasome is a central player in the induction of obesity and insulin resistance

scientific article

Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice.

scientific article published in May 2018

MADMAX - Management and analysis database for multiple ~omics experiments.

scientific article published on 21 July 2011

MDR1, MultiDrug Resistance Exporter 1

Maternal exposure to a Western-style diet causes differences in intestinal microbiota composition and gene expression of suckling mouse pups.

scientific article published on 30 April 2016

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut.

scientific article

Microbial stimulation of different Toll-like receptor signalling pathways induces diverse metabolic programmes in human monocytes

scientific article published on 19 December 2016

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

scientific article published on 09 January 2019

Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila.

scientific article

Multidrug resistance protein MRP1 protects against the toxicity of the major lipid peroxidation product 4-hydroxynonenal

scientific article published on September 2000

Nonlinear transcriptomic response to dietary fat intake in the small intestine of C57BL/6J mice

scientific article published on 9 February 2016

Nutrient supply alters transcriptome regulation in adipose tissue of pre-weaning Holstein calves

scientific article published in PLoS ONE

Oit1/Fam3D, a gut-secreted protein displaying nutritional status-dependent regulation.

scientific article

Overexpression of PLIN5 in skeletal muscle promotes oxidative gene expression and intramyocellular lipid content without compromising insulin sensitivity

scientific journal article

PPAR-alpha dependent regulation of vanin-1 mediates hepatic lipid metabolism

scientific article published on 18 April 2014

PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression

scientific article

Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis

scientific article published in August 2014

Plasma bioavailability and changes in PBMC gene expression after treatment of ovariectomized rats with a commercial soy supplement.

scientific article published on 2 January 2015

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.

scientific article published on 18 August 2017

Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis, and RNA expression in Holstein heifer calves

scientific article published on 03 January 2019

Publisher Correction: Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo

scientific article published on 11 January 2018

Purified Dietary Red and White Meat Proteins Show Beneficial Effects on Growth and Metabolism of Young Rats Compared to Casein and Soy Protein

scientific article published on 13 September 2018

Quantitative Structure-Activity Relationships Based on Computer Calculated Parameters for the Overall Rate of Glutathione S-Transferase Catalyzed Conjugation of a Series of Fluoronitrobenzenes

scientific article published on 01 June 1995

RNA sequencing reveals niche gene expression effects of beta-hydroxybutyrate in primary myotubes

scientific article published on 18 August 2021

Relative power and sample size analysis on gene expression profiling data.

scientific article

Resistant starch induces catabolic but suppresses immune and cell division pathways and changes the microbiome in the proximal colon of male pigs

scientific article

SUCNR1-mediated chemotaxis of macrophages aggravates obesity-induced inflammation and diabetes.

scientific article

Short-chain fatty acids stimulate angiopoietin-like 4 synthesis in human colon adenocarcinoma cells by activating peroxisome proliferator-activated receptor γ

scientific article

Soy supplementation: Impact on gene expression in different tissues of ovariectomized rats and evaluation of the rat model to predict (post)menopausal health effect

scientific article published on 24 October 2018

Strigolactone biosynthesis in Medicago truncatula and rice requires the symbiotic GRAS-type transcription factors NSP1 and NSP2.

scientific article published on 28 October 2011

Systems Biology of Host-Food-Microbe Interactions in the Mammalian Gut

Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice

scientific article published on 23 May 2012

The Gene Expression Barcode 3.0: improved data processing and mining tools

scientific article

The Molecular Basis for Hepatobiliary Transport of Organic Cations and Organic Anions

article

The cholesterol-raising factor from coffee beans, cafestol, as an agonist ligand for the farnesoid and pregnane X receptors

scientific article

The effect of trans-10, cis-12 conjugated linoleic acid on gene expression profiles related to lipid metabolism in human intestinal-like Caco-2 cells.

scientific article published on 13 March 2009

The effects of long-term daily folic acid and vitamin B12 supplementation on genome-wide DNA methylation in elderly subjects

scientific article

The gut microbiota and mucosal homeostasis: colonized at birth or at adulthood, does it matter?

scientific article published on 18 January 2013

The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation

scientific article

The role of oxidative stress in the differential effects between n−3 and n−6 polyunsaturated fatty acids and the protective effects of algal and fish oil in colon carcinogenesis

The role of the small intestine in the development of dietary fat-induced obesity and insulin resistance in C57BL/6J mice

scientific article

The whole transcriptome effects of the PPARα agonist fenofibrate on livers of hepatocyte humanized mice.

scientific article published on 7 June 2018

Transcriptome comparisons of in vitro intestinal epithelia grown under static and microfluidic gut-on-chip conditions with in vivo human epithelia

scientific article published on 05 February 2021

Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo.

scientific article published on 6 November 2017

Transient inflammatory-like state and microbial dysbiosis are pivotal in establishment of mucosal homeostasis during colonisation of germ-free mice.

scientific article

Unique metabolic activation of adipose tissue macrophages in obesity promotes inflammatory responses.

scientific article published on 14 January 2018

and Effects of Lactate on Metabolism and Cytokine Production of Human Primary PBMCs and Monocytes

scientific article published on 12 November 2018

cell- and tissue-specific transcriptome analyses of Medicago truncatula root nodules

scientific article

microRNA 193a-5p Regulates Levels of Nucleolar- and Spindle-Associated Protein 1 to Suppress Hepatocarcinogenesis

scientific article published on 27 August 2018

List of works by Guido Jej Hooiveld

3-Hydroxy-3-methylglutaryl-coenzyme A reductase inhibitors (statins) induce hepatic expression of the phospholipid translocase mdr2 in rats

A 12-wk whole-grain wheat intervention protects against hepatic fat: the Graandioos study, a randomized trial in overweight subjects

A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load.

A Robust Auxin Response Network Controls Embryo and Suspensor Development through a Basic Helix Loop Helix Transcriptional Module

A cholesterol-free, high-fat diet suppresses gene expression of cholesterol transporters in murine small intestine.

A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine.

ANGPTL4 promotes bile acid absorption during taurocholic acid supplementation via a mechanism dependent on the gut microbiota.

An Integrated Statistical Approach to Compare Transcriptomics Data Across Experiments: A Case Study on the Identification of Candidate Target Genes of the Transcription Factor PPARα

Angptl4 protects against severe proinflammatory effects of saturated fat by inhibiting fatty acid uptake into mesenteric lymph node macrophages

Caspase-1 deficiency in mice reduces intestinal triglyceride absorption and hepatic triglyceride secretion

Characterization of stem cell-derived liver and intestinal organoids as a model system to study nuclear receptor biology.

Circadian misalignment induces fatty acid metabolism gene profiles and compromises insulin sensitivity in human skeletal muscle

Comparative Proteomics Provides Insights into Metabolic Responses in Rat Liver to Isolated Soy and Meat Proteins

Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human

Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon.

Conjugated linoleic acid enhances transepithelial calcium transport in human intestinal-like Caco-2 cells: An insight into molecular changes

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

Dietary soy and meat proteins induce distinct physiological and gene expression changes in rats

Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance

Distinct physiological, plasma amino acid, and liver transcriptome responses to purified dietary beef, chicken, fish, and pork proteins in young rats

Dose-dependent effects of dietary fat on development of obesity in relation to intestinal differential gene expression in C57BL/6J mice

Effect of synthetic dietary triglycerides: a novel research paradigm for nutrigenomics.

Effects of resistant starch on behaviour, satiety-related hormones and metabolites in growing pigs.

Erratum to “Function and Regulation of ATP-binding cassette transport proteins involved in hepatobiliary transport”

Expression of protocadherin gamma in skeletal muscle tissue is associated with age and muscle weakness

Feedback regulation of cardiac fatty acid uptake is mediated by Angptl4

Fermentation Kinetics of Selected Dietary Fibers by Human Small Intestinal Microbiota Depend on the Type of Fiber and Subject

Function and regulation of ATP-binding cassette transport proteins involved in hepatobiliary transport

Function and regulation of ATP-binding cassette transport proteins involved in hepatobiliary transport

Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting

Genome-wide age-related changes in DNA methylation and gene expression in human PBMCs.

Genome-wide analysis of PPARα activation in murine small intestine

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon

Gut-derived short-chain fatty acids are vividly assimilated into host carbohydrates and lipids.

Hepatic overexpression of cAMP-responsive element modulator α induces a regulatory T-cell response in a murine model of chronic liver disease.

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways

Increasing fish consumption does not affect genotoxicity markers in the colon in an intervention study

Induction of lipid oxidation by polyunsaturated fatty acids of marine origin in small intestine of mice fed a high-fat diet.

Inflammasome is a central player in the induction of obesity and insulin resistance

Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice.

MADMAX - Management and analysis database for multiple ~omics experiments.

MDR1, MultiDrug Resistance Exporter 1

Maternal exposure to a Western-style diet causes differences in intestinal microbiota composition and gene expression of suckling mouse pups.

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut.

Microbial stimulation of different Toll-like receptor signalling pathways induces diverse metabolic programmes in human monocytes

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila.

Multidrug resistance protein MRP1 protects against the toxicity of the major lipid peroxidation product 4-hydroxynonenal

Nonlinear transcriptomic response to dietary fat intake in the small intestine of C57BL/6J mice

Nutrient supply alters transcriptome regulation in adipose tissue of pre-weaning Holstein calves

Oit1/Fam3D, a gut-secreted protein displaying nutritional status-dependent regulation.

Overexpression of PLIN5 in skeletal muscle promotes oxidative gene expression and intramyocellular lipid content without compromising insulin sensitivity

PPAR-alpha dependent regulation of vanin-1 mediates hepatic lipid metabolism

PPARalpha-mediated effects of dietary lipids on intestinal barrier gene expression

Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis

Plasma bioavailability and changes in PBMC gene expression after treatment of ovariectomized rats with a commercial soy supplement.

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.

Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis, and RNA expression in Holstein heifer calves

Publisher Correction: Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo

Purified Dietary Red and White Meat Proteins Show Beneficial Effects on Growth and Metabolism of Young Rats Compared to Casein and Soy Protein

Quantitative Structure-Activity Relationships Based on Computer Calculated Parameters for the Overall Rate of Glutathione S-Transferase Catalyzed Conjugation of a Series of Fluoronitrobenzenes

RNA sequencing reveals niche gene expression effects of beta-hydroxybutyrate in primary myotubes

Relative power and sample size analysis on gene expression profiling data.

Resistant starch induces catabolic but suppresses immune and cell division pathways and changes the microbiome in the proximal colon of male pigs

SUCNR1-mediated chemotaxis of macrophages aggravates obesity-induced inflammation and diabetes.

Short-chain fatty acids stimulate angiopoietin-like 4 synthesis in human colon adenocarcinoma cells by activating peroxisome proliferator-activated receptor γ

Soy supplementation: Impact on gene expression in different tissues of ovariectomized rats and evaluation of the rat model to predict (post)menopausal health effect

Strigolactone biosynthesis in Medicago truncatula and rice requires the symbiotic GRAS-type transcription factors NSP1 and NSP2.

Systems Biology of Host-Food-Microbe Interactions in the Mammalian Gut

Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice

The Gene Expression Barcode 3.0: improved data processing and mining tools

The Molecular Basis for Hepatobiliary Transport of Organic Cations and Organic Anions

The cholesterol-raising factor from coffee beans, cafestol, as an agonist ligand for the farnesoid and pregnane X receptors

The effect of trans-10, cis-12 conjugated linoleic acid on gene expression profiles related to lipid metabolism in human intestinal-like Caco-2 cells.

The effects of long-term daily folic acid and vitamin B12 supplementation on genome-wide DNA methylation in elderly subjects

The gut microbiota and mucosal homeostasis: colonized at birth or at adulthood, does it matter?

The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation

The role of oxidative stress in the differential effects between n−3 and n−6 polyunsaturated fatty acids and the protective effects of algal and fish oil in colon carcinogenesis

The role of the small intestine in the development of dietary fat-induced obesity and insulin resistance in C57BL/6J mice