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List of works by Adrian M Altenhoff

A gridded hourly precipitation dataset for Switzerland using rain-gauge analysis and radar-based disaggregation

article

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications ⬇️

scientific article published on 8 October 2024

A stochastic boundary forcing for dissipative particle dynamics

article

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

Distinct evolutionary strategies in the GGPPS family from plants

scientific article

DrosOMA: the Drosophila Orthologous Matrix browser

scientific article published in 2024

Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python

scientific article published on 10 January 2019

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

scientific article

Gearing up to handle the mosaic nature of life in the quest for orthologs

scientific article published on 30 August 2017

How to build phylogenetic species trees with OMA

scientific article published in 2020

How to build phylogenetic species trees with OMA

scientific article published in 2022

Inferring hierarchical orthologous groups from orthologous gene pairs

scientific article

Inferring orthology and paralogy

scientific article

Linkage of atmospheric blocks and synoptic-scale Rossby waves: a climatological analysis

Linkage of atmospheric blocks and synoptic-scale Rossby waves: a climatological analysis

article

OMA

method and database for the inference of orthologs among complete genomes

OMA 2011: orthology inference among 1000 complete genomes

scientific article

OMA standalone: orthology inference among public and custom genomes and transcriptomes

OMA standalone: orthology inference among public and custom genomes and transcriptomes

scientific article published on 24 June 2019

Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference

scientific article

Phylogenetic and functional assessment of orthologs inference projects and methods

scientific article

Quality assessment of gene repertoire annotations with OMArk

scientific article published in 2024

Quality of computationally inferred gene ontology annotations

scientific article

Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs ⬇️

scientific article published on May 17, 2012

Speeding up all-against-all protein comparisons while maintaining sensitivity by considering subsequence-level homology

scientific article published on 7 October 2014

Standardized benchmarking in the quest for orthologs

scientific article (publication date: 4 April 2016)

Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree

article

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

scientific article

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.

scientific article

The Quest for Orthologs benchmark service and consensus calls in 2020

scientific article published on 06 May 2020

The SIB Swiss Institute of Bioinformatics Semantic Web of data

scientific article published on 25 October 2023

The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study

scientific article

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