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List of works by Luke R Thompson

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019
A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

scientific article
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

scientific article
Best practices for analysing microbiomes

scientific article published on 01 July 2018
Species-level functional profiling of metagenomes and metatranscriptomes

scholarly article by Eric A Franzosa published in October 2018
Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus

scientific article
American Gut: an Open Platform for Citizen Science Microbiome Research

article
Microbial community assembly and metabolic function during mammalian corpse decomposition.

scientific article published on 10 December 2015
Physiology and evolution of nitrate acquisition in Prochlorococcus.

scientific article published on 28 October 2014
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

scientific article published on 11 July 2018
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019
Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments.

scientific article
A catalogue of 136 microbial draft genomes from Red Sea metagenomes.

scientific article
Metagenomic covariation along densely sampled environmental gradients in the Red Sea.

scientific article
A Novel Sparse Compositional Technique Reveals Microbial Perturbations

article
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

scientific article
MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

scientific article published on 16 October 2019
Draft Genome Sequence of Uncultured SAR324 Bacterium lautmerah10, Binned from a Red Sea Metagenome.

scientific article published on 11 February 2016
Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage

scientific article
Distribution and diversity of Prochlorococcus ecotypes in the Red Sea.

scientific article
Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes

scientific article published on 2 February 2017
Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus

scientific article published on 09 July 2018
Parasite microbiome project: Grand challenges

scientific article published on 10 October 2019
Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers.

scientific article published on 12 April 2018
The genome of a novel isolate of Prochlorococcus from the Red Sea contains transcribed genes for compatible solute biosynthesis

scientific article published on 01 November 2018
Mikrobielle Ökologie des Roten Meeres

article published in 2012
Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes

scientific article published on 17 June 2019
Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

scientific article published in 2022
Guidance and best practices for species identification using eDNA metabarcoding – When do you call a cod a cod?

EMP Sample Submission Guide v1 (protocols.io.pfqdjmw)

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021
Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021
MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms

scientific article published in 2022
Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies

scientific article published in 2021
Guidance and best practices for species identification using eDNA metabarcoding - When do you call a cod a cod?

A Metadata Checklist and Data Formatting Guidelines to Make eDNA FAIR (Findable, Accessible, Interoperable, and Reusable)

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

scientific article published on 28 November 2022

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