List of works - Luke R Thompson

A Novel Sparse Compositional Technique Reveals Microbial Perturbations

article

A catalogue of 136 microbial draft genomes from Red Sea metagenomes.

scientific article

A communal catalogue reveals Earth's multiscale microbial diversity

scientific article published in November 2017

American Gut: an Open Platform for Citizen Science Microbiome Research

article

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 September 2019

Best practices for analysing microbiomes

scientific article published on 01 July 2018

Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus

scientific article

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

scientific article published in 2021

Distribution and diversity of Prochlorococcus ecotypes in the Red Sea.

scientific article

Draft Genome Sequence of Uncultured SAR324 Bacterium lautmerah10, Binned from a Red Sea Metagenome.

scientific article published on 11 February 2016

EMP Sample Submission Guide v1 (protocols.io.pfqdjmw)

Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus

scientific article published on 09 July 2018

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

scientific article published on 11 July 2018

Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage

scientific article

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

scientific article

Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers.

scientific article published on 12 April 2018

MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms

scientific article published in 2022

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

scientific article published on 16 October 2019

Metagenomic covariation along densely sampled environmental gradients in the Red Sea.

scientific article

Microbial community assembly and metabolic function during mammalian corpse decomposition.

scientific article published on 10 December 2015

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

scientific article published on 22 February 2021

Mikrobielle Ökologie des Roten Meeres

article published in 2012

Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies

scientific article published in 2021

Parasite microbiome project: Grand challenges

scientific article published on 10 October 2019

Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments.

scientific article

Physiology and evolution of nitrate acquisition in Prochlorococcus.

scientific article published on 28 October 2014

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

scientific article

Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes

scientific article published on 17 June 2019

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

scientific article published on 01 August 2019

Species-level functional profiling of metagenomes and metatranscriptomes

scholarly article by Eric A Franzosa published in October 2018

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

scientific article

The genome of a novel isolate of Prochlorococcus from the Red Sea contains transcribed genes for compatible solute biosynthesis

scientific article published on 01 November 2018

Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

scientific article published in 2022

Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes

scientific article published on 2 February 2017

List of works by Luke R Thompson

A Novel Sparse Compositional Technique Reveals Microbial Perturbations

A catalogue of 136 microbial draft genomes from Red Sea metagenomes.

A communal catalogue reveals Earth's multiscale microbial diversity

American Gut: an Open Platform for Citizen Science Microbiome Research

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Best practices for analysing microbiomes

Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

Distribution and diversity of Prochlorococcus ecotypes in the Red Sea.

Draft Genome Sequence of Uncultured SAR324 Bacterium lautmerah10, Binned from a Red Sea Metagenome.

EMP Sample Submission Guide v1 (protocols.io.pfqdjmw)

Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

Hopanoid-producing bacteria in the Red Sea include the major marine nitrite-oxidizers.

MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

Metagenomic covariation along densely sampled environmental gradients in the Red Sea.

Microbial community assembly and metabolic function during mammalian corpse decomposition.

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

Mikrobielle Ökologie des Roten Meeres

Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies

Parasite microbiome project: Grand challenges

Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments.

Physiology and evolution of nitrate acquisition in Prochlorococcus.

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Species-level functional profiling of metagenomes and metatranscriptomes

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.

The genome of a novel isolate of Prochlorococcus from the Red Sea contains transcribed genes for compatible solute biosynthesis

Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake

Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes