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List of works by Samuel Soubeyrand

A Bayesian approach for inferring the dynamics of partially observed endemic infectious diseases from space-time-genetic data

scientific article published on 11 March 2014

A Bayesian inference framework to reconstruct transmission trees using epidemiological and genetic data

scientific article

A Continuous Time-and-State Epidemic Model Fitted to Ordinal Categorical Data Observed on a Lattice at Discrete Times

article published in 2013

A Nonstationary Cylinder–Based Model Describing Group Dispersal in a Fragmented Habitat

article

A Spatio-Temporal Exposure-Hazard Model for Assessing Biological Risk and Impact.

scientific article published on 11 December 2017

A framework to assess the contribution of bioaerosols to the outcome of meteorological contexts favorable for rainfall

scholarly article published 21 August 2016

A statistical-reaction-diffusion approach for analyzing expansion processes

scientific article

Accounting for biological variability and sampling scale: a multi-scale approach to building epidemic models

scientific article published on October 2007

Accounting for roughness of circular processes: using Gaussian random processes to model the anisotropic spread of airborne plant disease

scientific article published on 7 October 2007

Aggregation patterns in hierarchy/proximity spaces

scientific article published in 2010

Approximate Bayesian computation with functional statistics

scientific article published on 26 March 2013

Assessing the Mismatch Between Incubation and Latent Periods for Vector-Borne Diseases: The Case of Sharka

scientific article published on 29 October 2015

Autoinfection in wheat leaf rust epidemics

scientific article published on 07 January 2008

Building anisotropic sampling schemes for the estimation of anisotropic dispersal

article published in 2009

Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence

scientific article published in 2024

COVID-19 mortality dynamics: The future modelled as a (mixture of) past(s)

scientific article published on 11 September 2020

Colony adaptive response to simulated heat waves and consequences at the individual level in honeybees (Apis mellifera)

scientific article

Computing Geographical Networks Generated by Air‐Mass Movement

scientific article published in 2023

Effect of a one-month lockdown on the epidemic dynamics of COVID-19 in France

scientific article published on 25 April 2020

Emigration of the plant pathogen Pseudomonas syringae from leaf litter contributes to its population dynamics in alpine snowpack

scientific article published on 22 December 2011

Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape

Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape.

scientific article

Evolution of dispersal in asexual populations: to be independent, clumped or grouped?

Exploiting Genetic Information to Trace Plant Virus Dispersal in Landscapes

scientific article

Exploring spatial and multitype assemblages of species abundances

scientific article published in December 2009

Flight behavior and pheromone changes associated to Nosema ceranae infection of honey bee workers (Apis mellifera) in field conditions

scientific article

Goodness-of-fit test of the mark distribution in a point process with non-stationary marks

article by Tomáš Mrkvička et al published 24 June 2011 in Statistics and Computing

Heuristic optimisation of the management strategy of a plant epidemic using sequential sensitivity analyses

article

Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases.

scientific article published in June 2019

Inferring pathogen dynamics from temporal count data: the emergence of Xylella fastidiosa in France is probably not recent

scientific article published on 24 April 2018

Linking winter conditions to regional disease dynamics in a wild plant-pathogen metapopulation

scientific article published on 10 November 2014

Long-distance wind-dispersal of spores in a fungal plant pathogen: estimation of anisotropic dispersal kernels from an extensive field experiment.

scientific article

Mapping Rainfall Feedback to Reveal the Potential Sensitivity of Precipitation to Biological Aerosols

Mechanical-statistical modeling in ecology: from outbreak detections to pest dynamics

scientific article

Mechanistic-statistical SIR modelling for early estimation of the actual number of cases and mortality rate from COVID-19

scientific article (preprint)

Model-based estimation of the link between the daily survival probability and a time-varying covariate, application to mosquitofish survival data

scientific article

Modelling the spread in space and time of an airborne plant disease

article

Monte Carlo testing in spatial statistics, with applications to spatial residuals

On parameter estimation for doubly inhomogeneous cluster point processes

OutbreakTools: a new platform for disease outbreak analysis using the R software

scientific article (publication date: June 2014)

PESO: a modelling framework to help improve management strategies for epidemics - application to sharka

Parameter estimation for reaction-diffusion models of biological invasions

article

Patchy patterns due to group dispersal

scientific article published on 3 December 2010

Rainfall feedback via persistent effects on bioaerosols

Rearranging agricultural landscapes towards habitat quality optimisation: In silico application to pest regulation

scientific article published in 2016

Regression-based ranking of pathogen strains with respect to their contribution to natural epidemics

scientific article published on 31 January 2014

Reproductive consequences of Colletotrichum lindemuthianum (Ascomycota) infection on wild bean plants (Phaseolus vulgaris)

article

Residual-based specification of a hidden random field included in a hierarchical spatial model

article

Residual-based specification of the random-effects distribution for cluster data

Sharka epidemiology and worldwide management strategies: learning lessons to optimize disease control in perennial plants

scientific article published on 29 May 2015

Skew-normality for climatic data and dispersal models for plant epidemiology: When application fields drive spatial statistics

article

Spatial exposure-hazard and landscape models for assessing the impact of GM crops on non-target organisms

scientific article published on 18 December 2017

Spatiotemporal Structure of Host‐Pathogen Interactions in a Metapopulation

scholarly article by Samuel Soubeyrand et al published September 2009 in The American Naturalist

Spatiotemporal structure of host-pathogen interactions in a metapopulation

scientific article

Testing Differences Between Pathogen Compositions with Small Samples and Sparse Data

scientific article

The current COVID-19 wave will likely be mitigated in the second-line European countries

scientific article published on 22 April 2020

The impact of within-herd genetic variation upon inferred transmission trees for foot-and-mouth disease virus

scientific article published on 8 April 2015

Transmission ofLeptosphaeria maculansfrom a cropping season to the following one

article

Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France

scientific article published on 08 May 2020

Using genetic data to estimate diffusion rates in heterogeneous landscapes

scientific article

Using sensitivity analysis to identify key factors for the propagation of a plant epidemic

scientific article published on 17 January 2018

Weak convergence of posteriors conditional on maximum pseudo-likelihood estimates and implications in ABC

article

When Group Dispersal and Allee Effect Shape Metapopulation Dynamics

article

cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms

scientific article published on 9 February 2016

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